DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and prd

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster


Alignment Length:447 Identity:110/447 - (24%)
Similarity:158/447 - (35%) Gaps:156/447 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 GSLAPKDFGMESLNGFGVGPNSKKK---------------------------------KKKRRHS 233
            |..||.|..|.|.:|...|..:|..                                 |:|:|..
  Fly   152 GRDAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRC 216

  Fly   234 RTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTE-KVWGGSTI 297
            ||.|::.||::||.||:...|||:|.||.|:.:|.|.|.||||||.||||:.||.. .|.||:. 
  Fly   217 RTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHTSVSGGAP- 280

  Fly   298 MAEYGLYGAMVRH-----SLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKDDSGV 357
                |...|.|.|     |||   :::.|.   .::||  |.|....:...::..|         
  Fly   281 ----GGAAASVSHVAASSSLP---SVVSSV---PSMAP--LAMMPGSLDPATVYQQ--------- 324

  Fly   358 SDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPP---------TSTS 413
              ..|..||             ||    ..|::..:|..||..:...|:.||         .:|:
  Fly   325 --QYDFYGS-------------HA----NISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTA 370

  Fly   414 GYAGAASSAATTPTGASTTNSSSSPHIELGSP-SPQQQQHLQLQQQQQQQASLYLGAGAVVTGCA 477
            .|.....:..|||||....   ||...:|||. ..:.:.|..:.:.:....|:....|.:     
  Fly   371 SYIMPGENGNTTPTGNIIV---SSYETQLGSVYGTETETHQTMPRNESPNESVSSAFGQL----- 427

  Fly   478 PPSYHPLLDAANAAG-----------------AGAAASSKDFHMIMNTAVAAAAAAAQQQ----- 520
            ||:.:.|....:.||                 |.|:|.|::....:........||:|.|     
  Fly   428 PPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGSEELSAALKVESVDLIAASQSQLYGGW 492

  Fly   521 --------------------------------HQQ---QQQQQQQATATAPGLHAHN 542
                                            ||.   .|...|.|:..||| |||:
  Fly   493 SSMQALRPNAPLSPEDSLNSTSSTSQALDVTAHQMFHPYQHTPQYASYPAPG-HAHS 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 30/56 (54%)
OAR 556..572 CDD:461067
prdNP_723721.1 PAX 27..154 CDD:238076 1/1 (100%)
Homeodomain 214..270 CDD:459649 30/55 (55%)
Blue background indicates that the domain is not in the aligned region.

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