DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and CG32532

DIOPT Version :9

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_608318.5 Gene:CG32532 / 32943 FlyBaseID:FBgn0052532 Length:688 Species:Drosophila melanogaster


Alignment Length:426 Identity:102/426 - (23%)
Similarity:127/426 - (29%) Gaps:190/426 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 TNATMATAATSAATAATPTNAAEGNLTSVSEPQQQPQQQQQEQQHHQ--------------PHHH 98
            ::|..:.|..|.|.|....:...|.|.||...|||.|||||:||..|              |...
  Fly   152 SHAHSSHAHGSHAHALAIAHGHHGLLPSVVPQQQQQQQQQQQQQQQQQQAQQLPPGVGVASPLQQ 216

  Fly    99 QYREHHQMTM----------------------------------AAASRMAYFNAHAAVAAA--- 126
            |.::..|...                                  |....::...|.||.|||   
  Fly   217 QQQQQQQQQQQQQQQQQQQQLINNGGVSAGTPTLLIGNGPSSSGAGTGSVSAAAAAAAAAAAASS 281

  Fly   127 -------FMPHQLAAAVHHHHQHQH--------------------------QHHPH--------- 149
                   ..||.|..:.......|.                          :..|:         
  Fly   282 SSSSLPHVAPHSLGLSPQSSADSQQFNIFPAIFSRQLNFSAGGQGGKLSMDELRPNLVGGLLGLQ 346

  Fly   150 -----HHPHHPHGAVG------------------------------------------------- 160
                 .|....||.||                                                 
  Fly   347 QGLLEDHASMQHGGVGQDTKFMSFQDQRLMGIGGSHENRLLSLASSVQDTRSPITTLEKSSSSSL 411

  Fly   161 ------------------GPPPPPPMQHHHPHHPHHP--------LLHAQG-FPQLKS------F 192
                              |.|.|......|.|.|.|.        .:.|:| |.:||.      .
  Fly   412 NHQRKCSSTPEDFSALYSGLPTPGMDSSSHHHTPAHTPPSRLSDHTISAEGAFKKLKPEPNSGLS 476

  Fly   193 AAGAGTCLPGSLAPKDFGMESLN---GFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHY 254
            ...||...|||      |:.||:   |......|.....:||| ||.||..||.:||.||.::||
  Fly   477 TVSAGITSPGS------GLSSLSQHAGHTPTTASCPTPARRRH-RTTFTQEQLAELEAAFAKSHY 534

  Fly   255 PDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEK 290
            ||:|.||.|:..|:|.|.||||||||||||:||.||
  Fly   535 PDIYCREELARTTKLNEARIQVWFQNRRAKYRKQEK 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 33/52 (63%)
OAR 556..570 CDD:281777
CG32532NP_608318.5 Homeobox 513..566 CDD:278475 34/53 (64%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450861
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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