DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and mixl1

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_571015.3 Gene:mixl1 / 30115 ZFINID:ZDB-GENE-000208-20 Length:327 Species:Danio rerio


Alignment Length:273 Identity:68/273 - (24%)
Similarity:105/273 - (38%) Gaps:82/273 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 RHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGS 295
            |..||.||..|::.||:.:.:..|||:|.||.|...|.|||.||||||||||||.|:        
Zfish    59 RRKRTNFTQQQIDVLEKVYLDTKYPDIYLREKLEALTGLPESRIQVWFQNRRAKSRR-------- 115

  Fly   296 TIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHR-----KSIEAQSALKDDS 355
                :.|:       |:|       :....:.:.|..|.|.|...|:     ::::..|....||
Zfish   116 ----QVGI-------SIP-------NKTSGNILTPNNLLMHQFTTHQNHSGLENLQRTSTFTADS 162

  Fly   356 G----VSDHEDSAGSKSAHSEDLSR-----SRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTS 411
            .    ::..|:...:......|.:.     ||.......|:.|:||.|       .:.|...|..
Zfish   163 FHQQLINSSEEKISTIKGDIYDPTTIPCMFSRTQENPIKTDHLSVVVP-------RSYTQQYPKE 220

  Fly   412 TSGYAGAASSAATT----------------------------PTGASTTNSSSSP-HIELGSPSP 447
            ...:..:|:.|.:|                            |:.::...||||| ||..     
Zfish   221 HEQFTHSANHAKSTMKQFLVEYDNFPPNKTIGPEMKVVIPPLPSQSNFMMSSSSPKHIAC----- 280

  Fly   448 QQQQHLQLQQQQQ 460
             ..|::.:|.|.:
Zfish   281 -SVQNMSVQTQPE 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 31/55 (56%)
OAR 556..572 CDD:461067
mixl1NP_571015.3 Homeodomain 59..115 CDD:459649 31/55 (56%)
Blue background indicates that the domain is not in the aligned region.

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