Protein Alignment Vsx2 and ind

DIOPT Version :10

• Sequence 1: NP_001284897.1
• Gene: Vsx2 / 31469
• FlyBaseID: FBgn0263512
• Length: 645
• Species: Drosophila melanogaster
• Sequence 2: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Alignment Length: 307
• Identity: 86/307 - (28%)
• Similarity: 108/307 - (35%)
• Gaps: 116/307 - (37%)

  Fly    54 TAATSAATAAT---------PTNAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQYREHHQMTMA 109
            |||.:.|.||.         |.:.....|.|:. .|||.|||||:|||                |
  Fly    32 TAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLG-IQQQQQQQQQQQQH----------------A 79

  Fly   110 AASRMAYFNAHAAVAAAFMPHQLAAAVHHHHQHQHQHHPH--HHP---HHPHGAVGG-------- 161
            ||:        ||.|||      |||:        |.|||  ..|   :||:..:..
  Fly    80 AAA--------AAAAAA------AAAL--------QQHPHVSSSPGSLYHPYAQLFASKRKSSGF 122

  Fly   162 -------PPPP----PPMQHHHPHHPHH--PLLHAQGFPQLKSFAAGAGTCLPGSL--------- 204
                   |.||    |..|...|.|..:  |::.....|:..||..........||
  Fly   123 SNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEP 187

  Fly   205 APKDFGMESLNGFGVGPNSKKKKKKRRHS---------------------RTIFTSYQLEKLEEA 248
            ..|.|..||    ...|||...|   .||                     ||.|||.||.:||..
  Fly   188 QGKRFKHES----SCSPNSSPLK---NHSSGGPVEITPLINDYADSSKRIRTAFTSTQLLELERE 245

  Fly   249 FKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGS 295
            |....|.....|..::.:..|.|.::::||||||.|.:|     |||
  Fly   246 FSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK-----GGS 287

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Vsx2	NP_001284897.1	Homeodomain	230..287	CDD:459649	23/77 (30%)
		OAR	556..572	CDD:461067
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	21/55 (38%)