DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and unc-42

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001263845.1 Gene:unc-42 / 192081 WormBaseID:WBGene00006778 Length:279 Species:Caenorhabditis elegans


Alignment Length:257 Identity:66/257 - (25%)
Similarity:100/257 - (38%) Gaps:88/257 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PNSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKW 285
            |.|::...:||| ||.||..||::|:.||:::||||:|.||.|:..|:|.|.||||||||||||.
 Worm    92 PESERLNSRRRH-RTTFTQEQLQELDAAFQKSHYPDIYVREELARITKLNEARIQVWFQNRRAKH 155

  Fly   286 RKTEKVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSA 350
            ||.||                .:..::..|.:.|    .|.|......||....::|.....||.
 Worm   156 RKHEK----------------QLNKAINPPHSFL----SNPANTLMRQGMYPAALNRDGFWYQSY 200

  Fly   351 LKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGY 415
            .:.                                       .|.|::.|:.:::...|.:..|:
 Worm   201 QRP---------------------------------------MPYPTASPSYSNSFTNPIANFGH 226

  Fly   416 A-------------GAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQAS 464
            :             ..|....|||:.|:...|.:               ::..||.|..:||
 Worm   227 SITSFQADDEFYQKSLALRMTTTPSAATAATSLA---------------NINYQQTQPSEAS 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 35/56 (63%)
OAR 556..572 CDD:461067
unc-42NP_001263845.1 Homeodomain 101..157 CDD:459649 35/56 (63%)
Blue background indicates that the domain is not in the aligned region.

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