DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and ceh-8

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_492246.2 Gene:ceh-8 / 191617 WormBaseID:WBGene00000433 Length:276 Species:Caenorhabditis elegans


Alignment Length:213 Identity:68/213 - (31%)
Similarity:98/213 - (46%) Gaps:48/213 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 NSKKKK-----KKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNR 281
            :|:|.:     ||:|.:||.||::||..||.||.:.|||||||||.|:.|.:|||.|:|||||||
 Worm    47 SSRKNRDKIADKKQRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNR 111

  Fly   282 RAKWRKTEKVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIE 346
            |||:|:.||    .....|       .:|||            .|.:..|....|.|......:.
 Worm   112 RAKFRRQEK----QDCQGE-------EKHSL------------KDTMPSWSWMSENKTDTPPMLP 153

  Fly   347 AQSALKD--DSGVSDH--EDSAGSK-----------SAHSEDLSRS----RCHALSSSTESLNVV 392
            ..:.|..  ::|:||.  :.|.|.:           .|.:..:|::    ..:...|..:|:...
 Worm   154 PANTLSSTHNNGISDEFFKTSEGKEVYGFPFAEYGTPADNTHVSKTGNVFHLNFEDSDKKSMKKE 218

  Fly   393 SP-APSSCPTSASTSAPP 409
            || .||:.....|...||
 Worm   219 SPQTPSTSSPFISEYHPP 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 36/56 (64%)
OAR 556..572 CDD:461067
ceh-8NP_492246.2 Homeodomain 61..117 CDD:459649 36/55 (65%)
Blue background indicates that the domain is not in the aligned region.

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