DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and Phox2b

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_032914.1 Gene:Phox2b / 18935 MGIID:1100882 Length:314 Species:Mus musculus


Alignment Length:351 Identity:99/351 - (28%)
Similarity:119/351 - (33%) Gaps:145/351 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 AQGF---PQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGP------------NSKKKKKKRRH 232
            |.||   |...:|.|.:| |  .||.|....:.:|......|            ....:|:|:|.
Mouse    39 ASGFQYNPIRTTFGATSG-C--PSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRR 100

  Fly   233 SRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTI 297
            .||.|||.||::||..|.|.||||:|.||.|:||.:|.|.|:||||||||||:||.|:....:..
Mouse   101 IRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAA 165

  Fly   298 MAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKDDSGVSDHED 362
            .|:.|                                             .|..|.||...|.  
Mouse   166 AAKNG---------------------------------------------SSGKKSDSSRDDE-- 183

  Fly   363 SAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAASSAATTPT 427
               ||.|.|.|         ..||.     .|.|:..||      |....:|..|          
Mouse   184 ---SKEAKSTD---------PDSTG-----GPGPNPNPT------PSCGANGGGG---------- 215

  Fly   428 GASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAV-VTGCAPPSYHPLLDAANAA 491
                           |.|||                     |||. ..|...|...|....|.||
Mouse   216 ---------------GGPSP---------------------AGAPGAAGPGGPGGEPGKGGAAAA 244

  Fly   492 GAGAAASSKDFHMIMNTAVAAAAAAA 517
            .|.|||:          |.|||||||
Mouse   245 AAAAAAA----------AAAAAAAAA 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 35/56 (63%)
OAR 556..572 CDD:461067
Phox2bNP_032914.1 Homeodomain 99..155 CDD:459649 35/55 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..246 34/199 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..289 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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