DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and ceh-53

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_500361.3 Gene:ceh-53 / 182467 WormBaseID:WBGene00015651 Length:203 Species:Caenorhabditis elegans


Alignment Length:242 Identity:72/242 - (29%)
Similarity:101/242 - (41%) Gaps:68/242 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 APKDFGMESLNGFGVGPNSKKKKKKR--RHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKT 267
            :|..|.|.........|.|.:..::|  |..||.|:..|||.|||||.:..||||..||.|..:|
 Worm     4 SPMQFQMVMKECSSSPPQSAQNSEERRVRRLRTAFSENQLELLEEAFLKCQYPDVQQRETLGKQT 68

  Fly   268 ELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWL 332
            ||.|.||||||:|||||.||.::                  ..|.....|..:|.::.||     
 Worm    69 ELAEARIQVWFKNRRAKARKRQR------------------NESTDSCSTTEESNEEGDA----- 110

  Fly   333 LGMEQKCMHRKSIEAQSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPS 397
                ..|:.:|:       |:::.:......|                ||.:|:     :||..:
 Worm   111 ----DGCLKKKA-------KNETTIITWTPGA----------------ALFNSS-----LSPTTT 143

  Fly   398 SCPTSASTSAPPTS-----TSGYA-GAASSAATTPTG--ASTTNSSS 436
            |.||   |.|||.:     ...|| ....:..|.||.  |:||.::|
 Worm   144 SIPT---TPAPPLNFICHQNPFYAYNPYRNLNTIPTHLLAATTTAAS 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 35/58 (60%)
OAR 556..572 CDD:461067
ceh-53NP_500361.3 Homeodomain 32..81 CDD:459649 29/48 (60%)
Blue background indicates that the domain is not in the aligned region.

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