DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and ceh-36

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_510365.1 Gene:ceh-36 / 181529 WormBaseID:WBGene00000457 Length:257 Species:Caenorhabditis elegans


Alignment Length:271 Identity:76/271 - (28%)
Similarity:115/271 - (42%) Gaps:82/271 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 PLLHAQGFPQLKSFAAGAGTCLPG---------SLAPKDFGMESLNGFGVGPNSKKKKKKRRHSR 234
            |.|....:||   ||..|.|..|.         ::||            :.|||:..::..|..|
 Worm    10 PTLGYTAYPQ---FAFAAATTAPSLTSATTSSTTMAP------------MAPNSESGRRAGRRER 59

  Fly   235 TIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQ---VWFQNRRAKWRKTEKVWG--- 293
            |.|...||::||:.|:|..||||:.||.|:....||:.|:|   |||:|||||.|..:|:.|   
 Worm    60 TSFNRGQLDQLEKVFRETQYPDVHRREALAKAINLPDGRVQVITVWFKNRRAKDRNNKKMDGVHP 124

  Fly   294 GSTIMAEYGLYGAMVRHSLPLPDTILKSA------------------KDNDAVAPWLLGMEQKCM 340
            |||  :.....|:  .|:...|||  ||.                  :.|.||...|...:|:.:
 Worm   125 GST--SSRSSNGS--PHNESKPDT--KSLGIHIPGTPEFNAHSAAKYEANSAVLSQLQQQQQQQL 183

  Fly   341 HRKSIEAQSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSAST 405
            .    :.:|.|:|...::|.:                     ..||:||  :..|.::...|.:|
 Worm   184 Q----QPKSELEDSKPLADTK---------------------YDSTQSL--LPQAQAAAYASYAT 221

  Fly   406 SAP-PTSTSGY 415
            :|| |.:.:.|
 Worm   222 TAPYPYNYNSY 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 29/59 (49%)
OAR 556..572 CDD:461067
ceh-36NP_510365.1 Homeodomain 56..115 CDD:459649 29/58 (50%)
Blue background indicates that the domain is not in the aligned region.

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