DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and LOC1280259

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:XP_061515440.1 Gene:LOC1280259 / 1280259 VectorBaseID:AGAMI1_004826 Length:650 Species:Anopheles gambiae


Alignment Length:421 Identity:107/421 - (25%)
Similarity:142/421 - (33%) Gaps:160/421 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 PPPP--PPMQHHHPHHPHHPLLHAQGFPQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGPNSK 224
            ||||  ||.......||.....|...                                |.||.|.
Mosquito   382 PPPPTAPPTAEDRLKHPPESTAHVAN--------------------------------GHGPLSA 414

  Fly   225 KKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTE 289
            ....|:|.|||.||..||.:||..|:|.||||.:.||.||.:..|.|.|:||||||||||.||.|
Mosquito   415 LSNNKQRRSRTNFTLEQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHE 479

  Fly   290 KVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKDD 354
            .......|::.         ||.|: .|.|:..:    :||:             :...|.....
Mosquito   480 NQMHKGIILSS---------HSPPV-TTPLEPCR----IAPY-------------VNVPSLRAGT 517

  Fly   355 SGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAA 419
            .||     ..||                          ....|..|.|:||:|...:.:..|.||
Mosquito   518 GGV-----PPGS--------------------------GTGASGLPPSSSTTAAAAAAAAAAAAA 551

  Fly   420 SSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAVVTGCAPPSYHPL 484
            ::|...|...:..::..|..|     |...||:                |.|:.:|..|.|...|
Mosquito   552 AAAVNHPFPVAAFSAFDSAFI-----SAAAQQY----------------AAALSSGSVPTSLFSL 595

  Fly   485 LDAANAAGAGAAASSKDFHMIMNTAVAAAAAAAQQQHQQQQQQQQQATATAPGLHAHNLAAALME 549
            .......|..|||:                                |.||.||..        :.
Mosquito   596 SQYVPRPGGLAAAA--------------------------------AIATLPGFS--------VA 620

  Fly   550 HDPDAFRNNSIACLRAKAQEH---QARLLNN 577
            ||    :|:||..||.||::|   |.:::||
Mosquito   621 HD----KNSSIVDLRLKAEKHKENQKKIVNN 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 33/56 (59%)
OAR 556..572 CDD:461067 8/18 (44%)
LOC1280259XP_061515440.1 None

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