DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and Arx

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_031518.2 Gene:Arx / 11878 MGIID:1097716 Length:564 Species:Mus musculus


Alignment Length:688 Identity:169/688 - (24%)
Similarity:225/688 - (32%) Gaps:290/688 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QRSPFAIQELLGLAVAAATEAPTDLTTTA-----------GATVAKERQTPTPPKTTN------- 49
            :|||..:: |||    ||...|..|.:.|           .::...|.:...|||...       
Mouse    35 RRSPCKMR-LLG----AAQSLPAPLASRADQEKAMQGSPKSSSAPFEAELHLPPKLRRLYGPGGG 94

  Fly    50 ------ATMATAATSAATAATPTNAA--EGNLTSVSEPQQQPQQQQQEQQHHQPHHHQYREHHQM 106
                  |..|.||.:||.|||.|..|  .|.:.....|..:|.::|..                 
Mouse    95 RLLQGAAAAAAAAAAAAAAATATGTAGPRGEVPPPPPPAARPGERQDS----------------- 142

  Fly   107 TMAAASRMAYFNAHAAVAAAFMPHQLAAAVHHHHQHQHQHHPHHHPHHPHGAVGGPPPPPPMQHH 171
              |.|.      |.||.|||:...:::.|..........       :..:||...||||...:..
Mouse   143 --AGAV------AAAAAAAAWDTLKISQAPQVSISRSKS-------YRENGAPFVPPPPALDELS 192

  Fly   172 HP---HHPHHPLLHAQGFPQLKSFAAGAGT----------------------------------- 198
            .|   .||...|..|.| |. .:.|||.||                                   
Mouse   193 GPGGVAHPEERLSAASG-PG-SAPAAGGGTGAEDDEEELLEDEEDEEEEEELLEDDDEELLEDDA 255

  Fly   199 ---------CL---------------------PGSLAPKD---FGMESLNG--------FGVGPN 222
                     |.                     .|.|:||:   ...|...|        ...|.:
Mouse   256 RALLKEPRRCSVATTGTVAAAAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSD 320

  Fly   223 SKK---KKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAK 284
            |::   |:|:||: ||.|||||||:||.||::.|||||:.||.|:::.:|.|.|:||||||||||
Mouse   321 SEEGLLKRKQRRY-RTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAK 384

  Fly   285 WRKTEKVWGGSTIMAEYGLYGAMVRH--SLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEA 347
            |||.||. |..|             |  .||.|..:                             
Mouse   385 WRKREKA-GAQT-------------HPPGLPFPGPL----------------------------- 406

  Fly   348 QSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPT--SASTSAPPT 410
                                         |..|.||...::    ||.|...|.  ||.|:|   
Mouse   407 -----------------------------SATHPLSPYLDA----SPFPPHHPALDSAWTAA--- 435

  Fly   411 STSGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAVVTG 475
              :..|.||..:...|.|:::...|.:|   ||                   .|.:|||...   
Mouse   436 --AAAAAAAFPSLPPPPGSASLPPSGAP---LG-------------------LSTFLGAAVF--- 473

  Fly   476 CAPPSYHPLLDAANAAGAGAAASSKDFHMIMNTAV----AAAAAAAQQQHQQQQQQQQQATATAP 536
                 .||            |..|..|..:.:|..    |:.|||..:|.....:     .|.|.
Mouse   474 -----RHP------------AFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVE-----GAVAS 516

  Fly   537 GLHAHNLAAALMEHDPDAFRNNSIACLRAKAQEHQARL 574
            |..|....||...      |.:|||.||.||:||.|:|
Mouse   517 GALADPATAAADR------RASSIAALRLKAKEHAAQL 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 37/56 (66%)
OAR 556..572 CDD:461067 10/15 (67%)
ArxNP_031518.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 54..79 3/24 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..264 37/186 (20%)
Homeodomain 331..387 CDD:459649 37/56 (66%)
OAR 528..546 CDD:461067 10/23 (43%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 532..545 8/12 (67%)
Blue background indicates that the domain is not in the aligned region.

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