DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and Vsx1

DIOPT Version :9

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_473409.1 Gene:Vsx1 / 114889 MGIID:1890816 Length:363 Species:Mus musculus


Alignment Length:309 Identity:124/309 - (40%)
Similarity:154/309 - (49%) Gaps:66/309 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 PHGAVG-GPPPPPPMQHHHPHHPHHP----LLHAQGFPQLKSFAAGAGTCL-------------- 200
            |..|:| ||.|.|.:....|.....|    ||...|.....:.||....||              
Mouse    58 PAEAIGSGPGPGPGLCGSCPARGALPLGLGLLCGFGAQPPSAAAAARARCLLLADLRLLPSAGPE 122

  Fly   201 ----------PGSLAPKDFGMESLNGFGVGPNSKK----------KKKKRRHSRTIFTSYQLEKL 245
                      |.:|..:..........|..|:.:|          |:||||| ||:||::|||:|
Mouse   123 PAVAQGPVHPPPALGSQQRSESVSTSDGDSPSEEKNDPKMSLILGKRKKRRH-RTVFTAHQLEEL 186

  Fly   246 EEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMVRH 310
            |:||.|||||||||||||:.||||||||||||||||||||||.||.||||::|||||||||||||
Mouse   187 EKAFGEAHYPDVYAREMLAAKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRH 251

  Fly   311 SLPLPDTILKSAKD-NDAVAPWLLGMEQKCMHRKSIEAQSAL--------------KDDSGVSDH 360
            .:||||::|.||.. ..:.|||||||.:|....:..|::..|              ||:.|....
Mouse   252 CIPLPDSVLNSADSLQGSCAPWLLGMHKKSTGMRKPESEDKLAGLWEFDHLKKGANKDEDGPERG 316

  Fly   361 EDSAGSKSAHS-EDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAP 408
            .|.......:| ||::..    ||||:..      .....|..:||..|
Mouse   317 PDETTQNPENSLEDVAID----LSSSSRQ------ETKKMPPGSSTQLP 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 43/52 (83%)
OAR 556..570 CDD:281777
Vsx1NP_473409.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Octapeptide motif 31..38
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..66 3/7 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..166 5/43 (12%)
Nuclear localization signal. /evidence=ECO:0000255 168..173 3/4 (75%)
Homeobox 174..227 CDD:278475 44/53 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..363 15/66 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6364
eggNOG 1 0.900 - - E1_KOG0494
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002963
OrthoInspector 1 1.000 - - otm43241
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2566
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.800

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