DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and Vsx1

DIOPT Version :10

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_473409.1 Gene:Vsx1 / 114889 MGIID:1890816 Length:363 Species:Mus musculus


Alignment Length:309 Identity:124/309 - (40%)
Similarity:154/309 - (49%) Gaps:66/309 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 PHGAVG-GPPPPPPMQHHHPHHPHHP----LLHAQGFPQLKSFAAGAGTCL-------------- 200
            |..|:| ||.|.|.:....|.....|    ||...|.....:.||....||              
Mouse    58 PAEAIGSGPGPGPGLCGSCPARGALPLGLGLLCGFGAQPPSAAAAARARCLLLADLRLLPSAGPE 122

  Fly   201 ----------PGSLAPKDFGMESLNGFGVGPNSKK----------KKKKRRHSRTIFTSYQLEKL 245
                      |.:|..:..........|..|:.:|          |:||||| ||:||::|||:|
Mouse   123 PAVAQGPVHPPPALGSQQRSESVSTSDGDSPSEEKNDPKMSLILGKRKKRRH-RTVFTAHQLEEL 186

  Fly   246 EEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAEYGLYGAMVRH 310
            |:||.|||||||||||||:.||||||||||||||||||||||.||.||||::|||||||||||||
Mouse   187 EKAFGEAHYPDVYAREMLAAKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRH 251

  Fly   311 SLPLPDTILKSAKD-NDAVAPWLLGMEQKCMHRKSIEAQSAL--------------KDDSGVSDH 360
            .:||||::|.||.. ..:.|||||||.:|....:..|::..|              ||:.|....
Mouse   252 CIPLPDSVLNSADSLQGSCAPWLLGMHKKSTGMRKPESEDKLAGLWEFDHLKKGANKDEDGPERG 316

  Fly   361 EDSAGSKSAHS-EDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAP 408
            .|.......:| ||::..    ||||:..      .....|..:||..|
Mouse   317 PDETTQNPENSLEDVAID----LSSSSRQ------ETKKMPPGSSTQLP 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 47/56 (84%)
OAR 556..572 CDD:461067
Vsx1NP_473409.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Octapeptide motif 31..38
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..66 3/7 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..166 5/43 (12%)
Nuclear localization signal. /evidence=ECO:0000255 168..173 3/4 (75%)
Homeodomain 172..228 CDD:459649 47/56 (84%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..363 15/66 (23%)
Blue background indicates that the domain is not in the aligned region.

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