DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsx2 and arx

DIOPT Version :9

Sequence 1:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster
Sequence 2:XP_002933659.1 Gene:arx / 100486727 XenbaseID:XB-GENE-483940 Length:536 Species:Xenopus tropicalis


Alignment Length:552 Identity:130/552 - (23%)
Similarity:188/552 - (34%) Gaps:203/552 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 RQTPTPPKTTNATMATAATSAATAATPTNAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQYREH 103
            |:..:|......:.....|||.||.|......|.|:.....:....::.::::..:....:..:.
 Frog   156 REEHSPEGLLQQSQQQIQTSATTACTSLQDRLGALSQSPRDEDDDDEEDEDEEEEEEEEDEANKQ 220

  Fly   104 HQMTMAAASRMAYFNAHAAVAAAFMPHQLAAAVHHHHQHQHQHHPHHHPHHPHGAVGGPPPPPPM 168
            |....::....|:.                         |.|.||........     ...||| 
 Frog   221 HNPNNSSNPNRAHL-------------------------QEQQHPQFQSQQSQ-----QQQPPP- 254

  Fly   169 QHHHPHHPHHPLLHAQGFPQLKSFAAGAGTCLPGSLAPKDFGM------ESLNG-----FGVGPN 222
                                      |.||  ...|:||:..|      :..:|     ...|.:
 Frog   255 --------------------------GCGT--DAELSPKEELMLHSSDADGKDGEDSVCLSAGSD 291

  Fly   223 SKK---KKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAK 284
            |::   |:|:||: ||.|||||||:||.||::.|||||:.||.|:::.:|.|.|:||||||||||
 Frog   292 SEEGMLKRKQRRY-RTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAK 355

  Fly   285 WRKTEKVWGGSTIMAEYGLYGAMVRHS--LPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEA 347
            |||.||. |..|             |:  ||.|..:..|    ..:.|:|               
 Frog   356 WRKREKA-GAQT-------------HAPGLPFPGPLSAS----HPLGPYL--------------- 387

  Fly   348 QSALKDDSGVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTST 412
                 |.|....|.                                ||..|..|:|:.:|     
 Frog   388 -----DASPFPPHH--------------------------------PALDSAWTAAAAAA----- 410

  Fly   413 SGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAVVTGCA 477
               |.|..|....|.|::....|.||   ||                   .|.:|||...     
 Frog   411 ---AAAFPSLPPPPHGSAALPPSGSP---LG-------------------LSTFLGAAVF----- 445

  Fly   478 PPSYHPLLDAANAAGAGAAASSKDFHMIMNTAVAAAAAAAQQQHQQQQQQQQQATATAPGLHAHN 542
               .||            |..|..|..:.:|.....:|:......:|.....:::..:.||....
 Frog   446 ---RHP------------AFISPAFGRLFSTMAPLTSASTAAALLRQPSPAVESSVQSSGLSDPV 495

  Fly   543 LAAALMEHDPDAFRNNSIACLRAKAQEHQARL 574
            .|||      |. |.:|||.||.||:||.|:|
 Frog   496 TAAA------DR-RASSIAALRLKAKEHAAQL 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsx2NP_001284897.1 Homeobox 233..286 CDD:278475 34/52 (65%)
OAR 556..570 CDD:281777 8/13 (62%)
arxXP_002933659.1 Homeobox 305..358 CDD:365835 35/52 (67%)
OAR 500..518 CDD:367680 11/18 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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