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Protein Alignment Vsx2 and vsx1
DIOPT Version :9
Sequence 1: | NP_001284897.1 |
Gene: | Vsx2 / 31469 |
FlyBaseID: | FBgn0263512 |
Length: | 645 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001093670.1 |
Gene: | vsx1 / 100101658 |
XenbaseID: | XB-GENE-853166 |
Length: | 344 |
Species: | Xenopus tropicalis |
Alignment Length: | 187 |
Identity: | 103/187 - (55%) |
Similarity: | 131/187 - (70%) |
Gaps: | 24/187 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 222 NSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWR 286
:|:.|:||||| ||:||::|||:||:||.|||||||||||||:||||||||||||||||||||||
Frog 143 SSQAKRKKRRH-RTVFTAHQLEELEKAFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWR 206
Fly 287 KTEKVWGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDN--DAVAPWLLGMEQKCMHRKSIE--- 346
|.||.||.|::||||||||||||||:|||::|:.|||:. .:.|||||| ||:||::
Frog 207 KREKCWGRSSVMAEYGLYGAMVRHSIPLPESIINSAKNGLVGSCAPWLLG-----MHKKSVDITR 266
Fly 347 ----AQSALKDDSGVSDHEDSAGSKS---------AHSEDLSRSRCHALSSSTESLN 390
...|::...|.|..:|.....| ::|.|:|..|...|||:.:..|
Frog 267 TVDPEDMAIERSKGKSHVDDFTNRHSEFHRSPRQQSNSMDISEERAIDLSSTAKQEN 323
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Vsx2 | NP_001284897.1 |
Homeobox |
233..286 |
CDD:278475 |
44/52 (85%) |
OAR |
556..570 |
CDD:281777 |
|
vsx1 | NP_001093670.1 |
Homeobox |
153..207 |
CDD:365835 |
46/54 (85%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
1 |
1.000 |
109 |
1.000 |
Domainoid score |
I6281 |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0002963 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
otm48385 |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
4 | 3.910 |
|
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