DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12730 and cmtm3

DIOPT Version :9

Sequence 1:NP_001284896.1 Gene:CG12730 / 31466 FlyBaseID:FBgn0029771 Length:148 Species:Drosophila melanogaster
Sequence 2:NP_001003468.1 Gene:cmtm3 / 445074 ZFINID:ZDB-GENE-040801-206 Length:170 Species:Danio rerio


Alignment Length:135 Identity:35/135 - (25%)
Similarity:52/135 - (38%) Gaps:33/135 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSFYLAVVT---IGFVATGCLLLARYLR 72
            ::::.|..||..|..:..||:..:|          |..|...|.||   |.|:|...||.|...:
Zfish    24 KEFISSRKGLLLLGEVALSFISFVC----------FAASTAAAFVTAPLIEFLAALFLLFAYSTK 78

  Fly    73 LWQR---------QFCRCDPTLWSLAVHSSLALAYFTASGLVLS-LDIGAYTAAAFFGLTAFCIN 127
            ..:|         .|.||          .|.::.:|..|.:.:| ...||..||..||..|..:.
Zfish    79 FNERFKGFHWPLMDFLRC----------VSASIIFFIVSIMSVSKYPDGASKAAGVFGFIATIVF 133

  Fly   128 GLEAY 132
            .|:.|
Zfish   134 ALDFY 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12730NP_001284896.1 None
cmtm3NP_001003468.1 MARVEL 26..139 CDD:296526 35/133 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4788
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22776
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.