DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12730 and Cmtm1

DIOPT Version :10

Sequence 1:NP_572228.1 Gene:CG12730 / 31466 FlyBaseID:FBgn0029771 Length:148 Species:Drosophila melanogaster
Sequence 2:NP_001025085.1 Gene:Cmtm1 / 291823 RGDID:1560130 Length:399 Species:Rattus norvegicus


Alignment Length:114 Identity:22/114 - (19%)
Similarity:42/114 - (36%) Gaps:31/114 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QDYDRKYLLSMPGLCKLAC----------LLCSFVGILCIICGPVRVSNFRGSFYLAVVTIGFVA 61
            ||.||.......|.|...|          :..:...:.|.:.|..:      ..::|::    :.
  Rat   238 QDKDRVSKRFRDGFCNFCCSANGMLKALRMCITAASVFCFVIGGAQ------DLFVAIM----IQ 292

  Fly    62 TGCLLL---ARYLRLWQRQFCRCDPTLWSL--AVHSSLALAYFTASGLV 105
            ..|::|   ..||...| .|..|  ..|.|  .:::.:::|:.   |:|
  Rat   293 ETCIVLFFIIIYLIALQ-HFLTC--IHWPLLDLINTLISMAFL---GIV 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12730NP_572228.1 None
Cmtm1NP_001025085.1 PspC_subgroup_2 <2..192 CDD:468202
MARVEL 254..370 CDD:366555 16/98 (16%)
Blue background indicates that the domain is not in the aligned region.

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