DRSC/TRiP Functional Genomics Resources

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Protein Alignment frma and phex

DIOPT Version :9

Sequence 1:NP_572226.2 Gene:frma / 31464 FlyBaseID:FBgn0029769 Length:611 Species:Drosophila melanogaster
Sequence 2:NP_001307259.1 Gene:phex / 386969 ZFINID:ZDB-GENE-030103-2 Length:745 Species:Danio rerio


Alignment Length:712 Identity:154/712 - (21%)
Similarity:271/712 - (38%) Gaps:181/712 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 KSHPQADPCQNFYKVACGNWSASHA----TDSYESFMDRLDYNYQEKLADLLDNEREDDEPHFLQ 80
            |.....|||.:||:.|||.|...:.    :.|| .....|..|...||.:||:......:...::
Zfish    67 KMDQSVDPCDDFYQYACGGWLRENPIPEDSSSY-GIYPWLRQNVDLKLKELLEQPVRSGDIEAVK 130

  Fly    81 QLRNFYTACRKPLSQDQVLRILEHLIVMENIQNEEL-------SVGLTAAF-------------- 124
            :.:..|.:|    ..:..|.|.:...:::|::.:|.       ::|.::.:              
Zfish   131 KAKVLYASC----MNESALEIEDANPLLKNLKQKEFRWPVLGDALGSSSRWVESQFNLLETLAQI 191

  Fly   125 ----------RLQVLIDLNDSNTY----DIWKQLMSHRKHWDPNTTN----REPLTREMFD---K 168
                      ||.|..|..:||.|    |.....:|.|:.:..|||.    ||.|.|.|.|   .
Zfish   192 RSQHSKSVLIRLFVAPDDKNSNQYIIKLDQASLSLSSREDYITNTTEAQMYREALLRLMVDVSVM 256

  Fly   169 LWAS-----------------LPKIPFPFKE------YYWRELSELEEKIMSYGSEDDGF----- 205
            |.||                 |.:|..|::.      |....||:|:..:..:...  ||     
Zfish   257 LGASEQAAEAQMKSVLDFEMKLAQIVIPYENRTSENMYNKYSLSKLQRTVPDFNWL--GFVRAVI 319

  Fly   206 -----------DSGDLVTRIPPFWMMPWPNGNITYENLSQMAHWLDIK--ANEFI---------- 247
                       .|..::.|.|.:           :::|.::.:..|.:  ||..|          
Zfish   320 DTELYPDLKISSSEQVIVRAPQY-----------FKDLFKLINATDTRTVANYVIWRSVFSRITT 373

  Fly   248 ----LTYIYMRLKLVAEGVS--TESWHIDRDQCAEQSRQILSHPAAWLVEKNHPRLKEEPVLQDI 306
                ..|.|:....|..|.:  |..|    |:|.......|.:.|..|....|.:..::.:::::
Zfish   374 LSRRFLYRYLDFARVTTGTTSLTPRW----DKCVNYVENTLIYAAGRLFVDKHFQEDKKHMMEEL 434

  Fly   307 FAELKQRFGQKLLANRNNFTRSTQHFLLGKLKRMRLRLSILPRNSSAQSMVR--RIERHYRDVHM 369
            ...::..|...|..........|:...:.|..      ::||:......::.  .|....:.:..
Zfish   435 INGIRWAFIDILEKENEWMDEETKRKAIDKAH------AVLPKVGYPDFILNDTYINEDIKRLAF 493

  Fly   370 NASDYFGNLHIGLNHSRSHKKYAQLWAIVFGRQLIPSRISKSDLY--PTQVRGYGTYASAFYIVK 432
            ..:|||||:...|       |:.....|.:.|:.:|    :::.:  ||.|       :|||...
Zfish   494 TMTDYFGNVMQTL-------KFIAQSDIGWLRKTVP----RTEWFTNPTTV-------NAFYSSS 540

  Fly   433 QNMLIVPLSLLEPPFYTH-GQPSILTYSALGFILGHELSHGFDSEGMTFSSHG-----VGSSAVD 491
            .|.:..|...|:.||:.. ..|..|:|.|:|.|:||||:||||:.|..:...|     ..:|:::
Zfish   541 TNQIRFPAGELQKPFFWGLNYPRSLSYGAIGVIVGHELTHGFDNNGRKYDKDGNLDQWWSNSSIN 605

  Fly   492 RELDR--------NPRFQQELGCLRRRFGRKRYEKFADASGLELAYSAYFDTAQTDHKRNRSAEE 548
            |..::        |..:.:|.| |..:..|...|..||..|:..::.||  ....:.:|....|.
Zfish   606 RFTEKTQCMIDQYNSYYWKEAG-LNVKGKRTLAENIADNGGIRESFRAY--RRWVEKERGGVEEP 667

  Fly   549 L-----VTQKQQFFHNFAQFFC------SDKELLQAHDHGSDRKRVNDAVAHFEPFREAFSC 599
            |     :|..|.||.::|...|      :.::.:|:..|...:.||..|:::||.||:||:|
Zfish   668 LLPGVGLTHNQLFFLSYAHVRCNAYRPEAARDQIQSGAHSPPKYRVIGAMSNFEEFRKAFNC 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
frmaNP_572226.2 GluZincin 25..601 CDD:301352 153/707 (22%)
phexNP_001307259.1 PepO 61..744 CDD:226118 154/712 (22%)
M13 72..743 CDD:189000 153/707 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11733
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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