DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment frma and nep-16

DIOPT Version :9

Sequence 1:NP_572226.2 Gene:frma / 31464 FlyBaseID:FBgn0029769 Length:611 Species:Drosophila melanogaster
Sequence 2:NP_001023203.2 Gene:nep-16 / 177541 WormBaseID:WBGene00018472 Length:868 Species:Caenorhabditis elegans


Alignment Length:698 Identity:146/698 - (20%)
Similarity:242/698 - (34%) Gaps:196/698 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 QADPCQNFYKVACGNWSASHATDSYESFMDRLDYNYQEKLADLLDNEREDDE--PHFLQQLRNFY 86
            :.:||:|||:.:|..:. |...|...||:.:|......::..||.:| ||..  |...:..|:.|
 Worm   253 EIEPCENFYRYSCQRYH-SQTADKQMSFLSQLKDESLRRMHSLLSSE-EDSRLLPKSARLSRSLY 315

  Fly    87 TAC-----RKPLSQDQVLRILEHL---IVMENIQN-------EELSVGLT--AAFRLQVLIDLND 134
            :||     |...:...:|..:.:.   .::.:.||       .|...|:.  .|.|..:::...|
 Worm   316 SACMNAVLRSSNAPTDLLTFIRNFPCGPLLRDCQNFHADSYSWERHAGMLDWYAGRYNLIVYDRD 380

  Fly   135 SNTYDIWKQLMS-------------HRKHWD---PNTTNREPL----TREMFDKLWA--SLPKIP 177
            .:..|..|.::.             .|...|   |:.|..|||    .|:.....:|  ||.:.|
 Worm   381 VHPQDRSKIILQIKPPDLTPIVGLIERDLIDLARPSPTEFEPLLQLSLRQNLLSAFARDSLLRDP 445

  Fly   178 FPFKEYYWREL-SELEE--KIMSYGSEDDGFDSGDLVTRIPPFWMMPWPNGNITYENLSQMAHWL 239
                    |:: |:|:|  ::|.     |.:.|......:.|         |.||..:.:|..  
 Worm   446 --------RDVQSQLDEVARLMV-----DLYISARQSASLTP---------NTTYMTIGEMFQ-- 486

  Fly   240 DIKANEFILTYIYMRLKLVAEGVSTESW------------HIDR--DQCAEQSRQILSH----PA 286
                   .|..:|:|..|.|:..:|..|            :..|  |..|:.|||.:::    ..
 Worm   487 -------ALPQLYLREFLDAQLSNTYRWTETDMLSIQDYDYFARLSDIMAQTSRQAVANYLLTVT 544

  Fly   287 AWLVEK--NHPR--------------------LKEEPVLQDIFAELKQRFGQKLLANRNNFTRST 329
            .|.:::  ..||                    :..:...|.|.....|.|.|.|..:..:..|||
 Worm   545 VWNLKQYSYSPRDQYGWRECVDQISSFEIGRKMYVDKASQTIDLPKIQEFLQNLKIDFLSVHRST 609

  Fly   330 QHFLLGKLKRMRLRLSILPRNSSAQSMVRRIERHYRDVHMNASDYFGNLHIGLNHSRSHKKYAQL 394
            ....|..:.|:...:. .||....:.:   |.:....|.:|.:|||.::                
 Worm   610 PLQYLSNINRLGFYVG-FPRRLQNEEL---IWKPVSQVSLNETDYFDSM---------------- 654

  Fly   395 WAIVFGRQLIPSRISKSDLYPTQVRGY-----GTY-----ASAFYIVKQNML--------IVPLS 441
                       .|:.|::      |.|     |||     .:.|.|....||        ::||:
 Worm   655 -----------IRVGKAE------RDYTMSQIGTYLDNDDTTTFPISDPTMLYNSNVGAIVIPLA 702

  Fly   442 LLEPPFYTHGQ--PSILTYSALGFILGHELS----HGFDSEGMTFSSHGVGSSAVDRELDRNPRF 500
            .:|||.|..|.  |....||:||......:|    .|.|..........|....:|....|:|..
 Worm   703 FIEPPIYLPGDEVPMYGIYSSLGITTLQMISKVFWQGLDKTSQLECLDNVFRGFLDANRQRSPNI 767

  Fly   501 QQELGCLRRRFGRKRYEKFADASGLEL-AYSAYFDTAQTDHKRNRSAEELVTQKQQFFHNFAQFF 564
            :.||         ....:.|||....| :|:.:.:.....|::...|.:.....:.....|:..|
 Worm   768 EPEL---------LATIELADAFKSALYSYAKWQNDHHIHHEKTLPAFDSTDSMRSLMLTFSTMF 823

  Fly   565 CSDKELLQAHDHGSD-RKRVNDAVAHFEPFREAFSCGPSPR---RRQC 608
            ||.    :..:.||| ...:|....:...|...|:|..|.|   ||.|
 Worm   824 CSG----EGSEPGSDYEAMINTVAENSRMFSIHFNCNNSSRLYNRRTC 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
frmaNP_572226.2 GluZincin 25..601 CDD:301352 141/685 (21%)
nep-16NP_001023203.2 GluZincin 254..>725 CDD:387391 112/540 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11733
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.