DRSC/TRiP Functional Genomics Resources

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Protein Alignment frma and nep-1

DIOPT Version :9

Sequence 1:NP_572226.2 Gene:frma / 31464 FlyBaseID:FBgn0029769 Length:611 Species:Drosophila melanogaster
Sequence 2:NP_496490.2 Gene:nep-1 / 174787 WormBaseID:WBGene00013926 Length:754 Species:Caenorhabditis elegans


Alignment Length:752 Identity:147/752 - (19%)
Similarity:253/752 - (33%) Gaps:223/752 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RLLELIVGLLVVQVKSHPQADPCQNFYKVACGNWSASHA----TDSYESFMDRLDYNYQEKLADL 66
            |||:..:.|         ..|||.:|::.||..|..||.    ..||..|...     :||:...
 Worm    74 RLLQKSLNL---------SLDPCDDFFEYACRAWVDSHPIPDDLTSYSQFTAT-----REKVLAE 124

  Fly    67 LDNEREDD----EPHFLQQLRNFYTACRKPLSQDQV--LRILEHL-------------------- 105
            :....||:    ....:..::..|..|......:.|  ..:||.:                    
 Worm   125 MRKLYEDNTSIPTSKSIALIKQIYNTCMDTEKHNAVGARDLLEKIKTYGYWPMVHNEKWRESTFD 189

  Fly   106 ---IVMENIQNEELSV-------------------------GLTAAFRLQVLIDLNDSNTYDIWK 142
               ::...||:.::||                         ||..:.|...|    |...|:  |
 Worm   190 LTKLLSNTIQSRDVSVFFDFGPAEDSRNVSRRLLSFDQGSLGLGYSTRDYYL----DEKKYE--K 248

  Fly   143 QLMSHRKH-------------WDPNTTNREPLTREM--FDKLWASL----------PKIPFPFKE 182
            |:.::||:             ...|.:..|....|:  |:|.||.:          .|:      
 Worm   249 QMKAYRKYTIGKVRYYTEDAGMAVNESKIESDVDEIIAFEKEWAQILVAEEDRRNYTKL------ 307

  Fly   183 YYWRELSELEEKIMSYGSEDDGFDSGDLVTRIPPFWMMPWPNGNIT-----YENLSQMAHWLDIK 242
            |..|...:|:| .||.      .|...|.....||.:..:...|.:     .|.|.:|...|...
 Worm   308 YNVRRFDDLKE-YMSI------IDWKKLTLSTTPFLVHSYLKTNPSIIISDVEYLQKMNTLLQNT 365

  Fly   243 ANEFILTYIYMRLKLVAEGVSTESW-------HIDRDQ------------------CAEQSRQIL 282
            ....:..||.:|.        ..||       :.|..|                  |...:...|
 Worm   366 DPRIVTNYILLRW--------AGSWSQEIGKKYEDLQQEFAFQMYGRKQRQPRWKDCVSSAGGKL 422

  Fly   283 SHPAAWLVEKNHPRLKEEPVLQDIFAELKQRFGQKLLANRNNFTRSTQHFLLGKLKRMRLRLSIL 347
            |:.:..:..:.:.....:....|:..:|::.|...:.|| :.....|:.:.|.|           
 Worm   423 SYASGSMYVRKYFDANAKNTTLDMITDLQEAFRNMMHAN-DWMDAETKKYALEK----------- 475

  Fly   348 PRNSSAQSMVRRIERHYRDVHMN---ASDYFGNLHIGLNHSRSHKKYAQL------WAIVFGRQL 403
                 |..|:::|  .|.|..:|   ..|::..|     .......::||      |...|..:.
 Worm   476 -----ADQMLKQI--GYPDFILNDEKLDDWYKGL-----EGAPEDSFSQLVEKSIQWRNNFYYRR 528

  Fly   404 IPSRISKSDLYPTQVRGYGTYASAFYIVKQNMLIVPLSLLEPPFYTHGQPSILTYSALGFILGHE 468
            :...:::.:...:     ....:|||...:|.:..|..:|:.||:....|..|.|..:|.::|||
 Worm   529 LLEPVNRFEFISS-----AAVVNAFYSPTRNAIAFPAGILQQPFFDARFPKALNYGGIGAVIGHE 588

  Fly   469 LSHGFDSEGMTFSSHGVGSSAVDRELDRNPRFQQELGCLRRRFGRKRY--------------EKF 519
            ::||||..|..|.:  ||:.....:...:.:|.:...|:..::...:.              |..
 Worm   589 ITHGFDDTGRQFDN--VGNLRDWWDNTTSSKFNERTQCIIEQYADVKLRGTDLRINGKLTQGENI 651

  Fly   520 ADASGLELAYSAYFDTAQTDHKRNRSAE----ELVTQKQQFFHNFAQFFCSDKE------LLQAH 574
            ||..|::.|:.||  .:..:....:.|.    |.:|.:|.||..:||.:|..|.      ||...
 Worm   652 ADNGGIKQAFKAY--KSYLEKHGGQEARLPQFESLTNEQLFFVGYAQVWCGAKTPETKTLLLLTD 714

  Fly   575 DHGSDRKRVNDAVAHFEPFREAFSC---GPSPRRRQC 608
            .|..:..|||..:.:...|.|||.|   .|....::|
 Worm   715 PHSPETARVNTVLTNQPEFAEAFKCPAGSPMNPTKRC 751

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
frmaNP_572226.2 GluZincin 25..601 CDD:301352 141/724 (19%)
nep-1NP_496490.2 PepO 80..754 CDD:226118 144/746 (19%)
M13 85..751 CDD:189000 142/730 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11733
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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