DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SPR and MsR1

DIOPT Version :9

Sequence 1:NP_001368972.1 Gene:SPR / 31463 FlyBaseID:FBgn0029768 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_001261324.1 Gene:MsR1 / 38298 FlyBaseID:FBgn0035331 Length:556 Species:Drosophila melanogaster


Alignment Length:542 Identity:125/542 - (23%)
Similarity:214/542 - (39%) Gaps:169/542 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 MEDNNISYWNLTCDSPLEYAMPLYGYCMPFLLIITIISNSLIVLVLSKKSMATPTNFVLMGMAIC 133
            |::.:.||.|            ::||....:.|:..|:|:|.::||:::.|.:|||.:|.|:|:.
  Fly    17 MDNFHTSYKN------------MHGYVSLVVCILGTIANTLNIIVLTRREMRSPTNAILTGLAVA 69

  Fly   134 DMLTVIFPAPGLWYMYTFGNHYKPLHPVSMCLAYS-----IFNEIMPAMCHTISVWLTLALAVQR 193
            |:..::...|...:.|...:..    |....|:||     .|:.|...:.||||:|||:.|||.|
  Fly    70 DLAVMLEYIPYTIHDYILTDSL----PREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWR 130

  Fly   194 YIYVCHAPMARTWCTMPR--VRRCTAYIAL-------LAFLHQLPRFFDRTYM--------PL-- 239
            ||.|.:....|.||.|..  :...|||:..       |..:..:..:.|:..|        |:  
  Fly   131 YIAVGYPQKNRVWCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYVDQLDMNGKVINSIPMTQ 195

  Fly   240 -VIEW------------NGSPTEVCHLETSMW---------------------VHDYIGVDLYYT 270
             ||::            |.:||. ..|..::|                     |.:.....||::
  Fly   196 YVIDYRNELLSARTAALNATPTS-APLNETVWLNASTLLTSTTTAAPPTPSPVVRNVTVYRLYHS 259

  Fly   271 -----------SYYLFRVLFVHLLPCIILVTLNILLFAAMRQAQERRKLLF-------------- 310
                       :.:|...:.:.|:|||.|..|::.|..|:.:|:.|||.|.              
  Fly   260 DLALHNASLQNATFLIYSVVIKLIPCIALTILSVRLILALLEAKRRRKKLTSKPATPGASNGTKS 324

  Fly   311 ----------RENRKKECKKLRETNCTTLMLIVVVSVFLLAEIPIAVVTAMHIVSSLIIEFLDYG 365
                      |:| .|..:|.::|:.||.||:.|:.:||:.|.|..::..::.|...:. :|.  
  Fly   325 PANGKAADRPRKN-SKTLEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAVLGDVF-YLQ-- 385

  Fly   366 LANICIM----LTNFFLVFSYPINFGIYCGMSRQFRETFKEIFLGRLM-------------AKKD 413
                |.:    |.:...:.:..|||.:||.||:|||.||..:|..:.:             |:.:
  Fly   386 ----CYLRLSDLMDILALINSSINFILYCSMSKQFRTTFTLLFRPKFLDKWLPVAQDEMAAARAE 446

  Fly   414 SSTKYSIVNGAR-------TCTNTNETVLXXLVMLVPRRGSSDHRRSSTSTTTTTTTKTI----- 466
            .|....::...|       ..|.||.|.:..|           ||||....|..:...::     
  Fly   447 RSAVAPVLEKGRQQPQVVMASTTTNITQVTNL----------XHRRSRGRRTLLSRLLSVLKRGR 501

  Fly   467 ------------GGSMIIGGEA 476
                        ||:.:.|.:|
  Fly   502 RRSSGEGGGVGGGGAPLAGNDA 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPRNP_001368972.1 7tmA_FMRFamide_R-like 90..400 CDD:410630 101/406 (25%)
TM helix 1 92..116 CDD:410630 8/23 (35%)
TM helix 2 124..146 CDD:410630 6/21 (29%)
TM helix 3 169..191 CDD:410630 10/21 (48%)
TM helix 4 214..230 CDD:410630 4/22 (18%)
TM helix 5 270..293 CDD:410630 7/33 (21%)
TM helix 6 328..353 CDD:410630 8/24 (33%)
TM helix 7 368..393 CDD:410630 7/28 (25%)
MsR1NP_001261324.1 7tm_4 30..427 CDD:304433 103/409 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467310
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8429
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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