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Protein Alignment HMGB1 and HmgD

DIOPT Version :10

Sequence 1:	NP_002119.1	Gene:	HMGB1 / 3146	HGNCID:	4983	Length:	215	Species:	Homo sapiens
Sequence 2:	NP_726109.1	Gene:	HmgD / 37481	FlyBaseID:	FBgn0004362	Length:	112	Species:	Drosophila melanogaster

Alignment Length:	110	Identity:	46/110 - (41%)
Similarity:	67/110 - (60%)	Gaps:	7/110 - (6%)

- Green bases have known domain annotations that are detailed below.

Human    95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 159
            ||||.||:.|:.:..|..||.|:||:.:.:|||:.||:|.  |..||..:|.||||.|:.|::.:
  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAV 67

Human   160 AAYRAKGKPDAAKKGVVK-----AEKSKKKKEEEEDEEDEEDEEE 199
            ..:.|.|...||..|..|     |:|..||.::||.:||::||.|
  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.