DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spoon and Tdrkh

DIOPT Version :9

Sequence 1:NP_726992.2 Gene:spoon / 31459 FlyBaseID:FBgn0263987 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001344640.1 Gene:Tdrkh / 72634 MGIID:1919884 Length:560 Species:Mus musculus


Alignment Length:462 Identity:100/462 - (21%)
Similarity:175/462 - (37%) Gaps:118/462 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 DQEELEQDQEQTVLKEEVVDSNGNQKRNVDAASPSLSICSVQSGD------SGKGSSLPRSEA-- 305
            |..|:|....|..:|..:.....|.|:........:.:.:...||      ||....:.:::|  
Mouse    51 DDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115

  Fly   306 ----TRVKTTYEFL-FPISLIGHLYGRKRAFINQIKAKTLASVSVGKNPYSGKV---RICTIEGT 362
                |.....:|.| .|...:|.:.||....|..|...:.|.::..|.. .|.:   |:..|.||
Mouse   116 HQILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES-EGTLLLSRLIKISGT 179

  Fly   363 ESEIDAALAMIRQ------------------RLPAKRYPNFTMQRIHFALP----QTIVPLSTES 405
            :.|:.||..:|.:                  |:|.|:  ..:::|.....|    :..:..:|.|
Mouse   180 QKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQ--PISVRREEVTEPGGAGEAALWKNTNS 242

  Fly   406 LYN----LQLKLIEGINNDVVVSAVLSGS------------------------------------ 430
            ...    |::.|.:| ..|:||.....||                                    
Mouse   243 SMGPATPLEVPLRKG-GGDMVVVGPKEGSWEKPNDDSFQNSGAQSSPETSMFEIPSPDFSFHADE 306

  Fly   431 --HIFIQHPLHPSH--------PSLPL--LQKQLYDSYSTMEAPLLP---SLELSAVCVIPI--N 478
              .:::....||:|        .||.|  |..::...|...    ||   ::.:..:...|:  |
Mouse   307 YLEVYVSASEHPNHFWIQIIGSRSLQLDKLVSEMTQHYENS----LPEDLTVHVGDIVAAPLSTN 367

  Fly   479 DVWYRVQIVDTDPEDEERCVIKFLDFGGYMNVGFNTLRQIRTDFMNVPFQSTECILSNIEPIGGT 543
            ..|||.:::.|  .:.....:.|:|||...:.....||.:|:||:::|||:.||.|:.|.|.|..
Mouse   368 GSWYRARVLGT--LENGNLDLYFVDFGDNGDCALKDLRALRSDFLSLPFQAIECSLARIAPTGEE 430

  Fly   544 WSIEAAEILNKLT-----KGIVLQAQVAGYNSHNL---PEIFLFASLGPNNVIFINKELVGRKLA 600
            |..||.:..::||     |.:|  |:::.|....:   |:|:|: .......:.|..|||.:..|
Mouse   431 WEEEALDEFDRLTHCADWKPLV--AKISSYVQTGISTWPKIYLY-DTSDEKKLDIGLELVRKGYA 492

  Fly   601 KWVEMSD 607
              ||:.:
Mouse   493 --VELPE 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spoonNP_726992.2 KH-I 311..373 CDD:238053 18/65 (28%)
TUDOR 413..536 CDD:278965 38/175 (22%)
TUDOR 465..522 CDD:295375 14/61 (23%)
TdrkhNP_001344640.1 KH_1 54..117 CDD:306517 11/62 (18%)
KH_1 127..192 CDD:306517 19/65 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..230 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 268..291 2/22 (9%)
TUDOR 303..422 CDD:306940 30/124 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2279
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR22948
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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