DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spoon and tdrkh

DIOPT Version :9

Sequence 1:NP_726992.2 Gene:spoon / 31459 FlyBaseID:FBgn0263987 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_031747152.1 Gene:tdrkh / 100145497 XenbaseID:XB-GENE-5945653 Length:720 Species:Xenopus tropicalis


Alignment Length:479 Identity:96/479 - (20%)
Similarity:157/479 - (32%) Gaps:164/479 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 TNYTNKECE----QNNNCEPKEEPS---------------KKEADQEELEQDQEQTVLK------ 263
            |.|.::..|    |.::..|...|:               |..:|..:|...:|..:.|      
 Frog    31 TKYRDRSGEKPGAQRDHVGPCTSPAPRLRVLDGEIYELCMKVPSDSVKLLVGKEGNIRKRVRKQT 95

  Fly   264 ------EEVVDSNGNQKRNVDAASPSLSICSVQSGDSGKGSSLPRSEATRVKTTYEFLFPISLIG 322
                  :||.||.|.|:  |........:|..|   ......|..|...||    |...|...:|
 Frog    96 DAHIQVKEVPDSAGAQE--VTLRGTQKQVCHAQ---EVVNRVLQESAILRV----ELQLPSKCMG 151

  Fly   323 HLYGRKRAFINQIKAKTLASVSV---GKNPYSGKVRICTIEGTESEIDAALAMIRQRLPAKRYPN 384
            .:.|:....|..|...|.|.:..   .........|..|:.||:.:::||              .
 Frog   152 RIIGQGGERIRAITRTTGAKIDCQPRTNGTQMSPTRCITVTGTKEQVEAA--------------K 202

  Fly   385 FTMQRI---HFALPQTIVPLST-----ESLYNLQLKLIEGINN---------------------- 419
            |.:|::   ..:|.|.....|.     :.|.:::.|..:..|:                      
 Frog   203 FHIQKVSEEEQSLQQRAAESSAFRCRRKELISVKKKEAQEANSRGSGIQEEKRGGAEPIGESLHR 267

  Fly   420 ----------------------------------DVVVSAVLSGSHIFIQHPLHPSHPSLPLLQK 450
                                              ||.||||.:..|.:|| .|......|..|..
 Frog   268 GNPPSKENVTDTTYEVPRFEVSSPEYPFRADEYVDVYVSAVENPEHFWIQ-ILGSRSTQLDKLTS 331

  Fly   451 QLYDSYSTMEAPLLPSLELSAVCVIPINDV----------WYRVQI--------VDTDPEDEERC 497
            ::.:.|...:         ..|..|.:.|:          |||.::        ||         
 Frog   332 EMTEHYQDKK---------GGVAEIQVGDIVAAPFRSDYFWYRAKVAGFLENGNVD--------- 378

  Fly   498 VIKFLDFGGYMNVGFNTLRQIRTDFMNVPFQSTECILSNIEPIGGTWSIEAAEILNKLTKGIV-- 560
             :.::|:|...:||...|..:|.||:::|||:.||.||.:.|.||.|:.||......||...:  
 Frog   379 -LYYVDYGDNWDVGREKLFPLRHDFLSLPFQAIECGLSKVSPNGGAWTEEALLYFEDLTHCALWK 442

  Fly   561 -LQAQVAGYNSHNLP--EIFLFAS 581
             |.|:::.:.|..:.  ::.||.|
 Frog   443 PLMAKISSFPSPGVSSFQVLLFDS 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spoonNP_726992.2 KH-I 311..373 CDD:238053 14/64 (22%)
TUDOR 413..536 CDD:278965 36/196 (18%)
TUDOR 465..522 CDD:295375 14/74 (19%)
tdrkhXP_031747152.1 KH_1 70..130 CDD:394971 14/64 (22%)
KH-I 138..220 CDD:412160 20/99 (20%)
Tudor_TDRD2 321..413 CDD:410483 23/110 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR22948
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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