DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp16-45 and Usp1

DIOPT Version :9

Sequence 1:NP_001284890.1 Gene:Usp16-45 / 31458 FlyBaseID:FBgn0029763 Length:1126 Species:Drosophila melanogaster
Sequence 2:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster


Alignment Length:1085 Identity:197/1085 - (18%)
Similarity:321/1085 - (29%) Gaps:381/1085 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 LLTLETPRIE--NERLPRVRGLTNLGNTCFFNAVMQCLAQTPFLLSVLKELSEPGEEFILPGG-- 349
            :||.:||::.  .:|..||          :....::|.:        |:...||..:..|.||  
  Fly    85 VLTADTPKLSPVKKRQRRV----------YVADTLRCYS--------LRSRQEPATKDPLEGGLK 131

  Fly   350 -TFTIKDKGDIELPMIKGTLSS------------WGGLTAALANALEELQ----AGGSVFTP--- 394
             ...:.....::.|....|.|:            |        |.:||.|    .|....||   
  Fly   132 QPDVVPPPPPVQAPSPTPTESTEYTPPEQFKSEFW--------NRIEEAQEPKPVGKKRRTPGGL 188

  Fly   395 -----RKLFDRLCVKCPQFTGGDQHDAHELLRQLLESVRNEDLK------RYQRVILQNLGYKDQ 448
                 .||...|.::.|:..........||         |...|      |..|.....:...|:
  Fly   189 KRTRGNKLLKELEIQSPETAAAIAAAQAEL---------NAAGKSGAAGARSSRKRTNTMSLYDR 244

  Fly   449 DVNSVSEEMRQKCKIYGNQAGDRILRPEQVFRGFLVSTLTCQDCHNVSSRHEYFLDMSLPVAVEK 513
            ...:.:|| |:....||..|...:                     ..||.:|        :..::
  Fly   245 RFQTTTEE-RRVANGYGGNAARSV---------------------TGSSSNE--------IESQE 279

  Fly   514 PQPPQRRKPSPELSLTSSSSSVTPSTG----QPTINTKFTDG------SVNFTASSPSFFLH-AH 567
            ||..|...|:...:...:.:.:..|..    .|::.|....|      ||.:|......||| .|
  Fly   280 PQSHQYYGPNGGSNAAGAGAGLNGSAAALNHAPSMGTLCNIGNSCYLNSVVYTLRFAPHFLHNLH 344

  Fly   568 EAASLGPSKSQVKKEKERQRKAKRAAKKRQKSSLNLNGNDSGNGNELAESVDQDDASLASLGAGD 632
            .   |....:.|::...||:.|:.|:..:..|:..|....|.:..:||.|.||.......:.:|:
  Fly   345 H---LIQDLNVVQQTIVRQQTARSASLGKNVSAAQLEHARSWSSKDLATSTDQYSGQNGGVNSGN 406

  Fly   633 GQANDGLEQTNGQTEDSTTSSVTTSEHSDADVEDNLVEDTAAPSTNNVPSSTASLTAPSKTYMDS 697
            |.:.         :..||..|||...|   ::.:||       ..|.:..||....|.:..:...
  Fly   407 GGSG---------SSKSTHQSVTEKLH---ELYNNL-------HGNEMADSTEPYHADTLLHAIQ 452

  Fly   698 NGNAQPPGEKRDDTPEHM---------DKDSL-----------------EEDENDSGIATSPAPT 736
            :.||...|.::.|..|.:         ...||                 ..||.|:|    ....
  Fly   453 DVNATFEGNQQQDAHEFLMCVLNCIRETNQSLIKAIGECPEVIANGYIANPDEVDTG----EGQD 513

  Fly   737 ATNSSTSTSATGNNNSVAGSGLS-------------------GSSGALEDPLAPASLVTAGLSEK 782
            .|:|:.|.:....|.|:|.|..:                   ..|..::.||...|....|::..
  Fly   514 RTDSTASQNLNAGNGSLATSQTTTTKTSFFSRKSKRKDEVKPSKSTRVQSPLKENSPTAGGITGA 578

  Fly   783 G-----ASVIRQVSVGAEQGASNGTEDADGEAKAIEQPE---KTPSQA------QAMAQAQARTK 833
            |     |:.:..::.....|||:.:..|...|..:....   .||.||      ..|..|.....
  Fly   579 GTAHATANSLFYLNTVDLSGASSTSGSASTSASGVVSTSAALPTPPQATKYSSDDEMNSATVLKD 643

  Fly   834 RVRTQS----------YSDWSTTIAPRYQC---------EDGECSV------------------- 860
            ::|.:.          .||:...:....:|         :.|...:                   
  Fly   644 KMRLEERIRELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLDISVPVPISGYDNADLQDKPS 708

  Fly   861 ----QSCLNNFTAVELMTGQNKVGCDSCTQRINGSDPKAKSVNTNATKQLLVSSPPAVLILHLKR 921
                .||:..    |...|:||..|:.||.            .|.|.:.:.....|.:|::.|.|
  Fly   709 TYIQNSCITK----EYFRGENKYSCNQCTG------------YTEAIRSISYEVLPRLLVIQLNR 757

  Fly   922 FQLGPRCIFRKLTRPVSYPNLLDIAAFCGSKVKNLPNIDRKQKKLLYALYGVVEHSGG-MYGGHY 985
            |..|    ..|::..|  |....:..||.:..:    :....|..:|.||.|:.|.|. :..|||
  Fly   758 FSGG----MEKVSTYV--PTTFTLPCFCATCCE----LGEGNKLHVYKLYSVITHVGATLTVGHY 812

  Fly   986 TAY-------------------------------VKVRPKVAPGD-------------------- 999
            .||                               |......||.:                    
  Fly   813 IAYTCFLDLASDYVNCPKDRRNTMTNSQTMASQAVPSNENAAPNNGSSSVASTPVIAAASALASS 877

  Fly  1000 -----KRWKFLPHGSKAELDQD-DDQLKKLEELLAK----------------------------- 1029
                 |:.||  ..|||....| ...:|::..:::|                             
  Fly   878 GNILMKKMKF--GRSKASSSGDMSKNVKQVNGIISKNITNGIGKLSISTTCQGVNCCAMRLCCTQ 940

  Fly  1030 EKAREQHLKVLDDSDDFSNSSSNSSTSDESQTPATPLEEQQTQQAQQPQQPQQLEEAANVRA--- 1091
            :.:........|.|::...:.|||:.|........|.....|.:             ..|||   
  Fly   941 QTSSSNSTSCSDFSEESLQNGSNSNLSFGGSGSTYPTGYGSTGR-------------GGVRANYA 992

  Fly  1092 ---PPGKWYYVSDSRVQE---------VSEDTALKAQAYLLFYER 1124
               |...||...|.:::.         :|....:....|||||.|
  Fly   993 HGGPDPIWYMCDDDKIKAMTQREFEELLSPTRKITITPYLLFYAR 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp16-45NP_001284890.1 zf-UBP 108..159 CDD:280334
Peptidase_C19 307..>512 CDD:271592 38/237 (16%)
Peptidase_C19K <849..1123 CDD:239132 68/407 (17%)
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 113/562 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456843
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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