DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp16-45 and usp20

DIOPT Version :9

Sequence 1:NP_001284890.1 Gene:Usp16-45 / 31458 FlyBaseID:FBgn0029763 Length:1126 Species:Drosophila melanogaster
Sequence 2:XP_009299732.1 Gene:usp20 / 393962 ZFINID:ZDB-GENE-040426-1219 Length:944 Species:Danio rerio


Alignment Length:1140 Identity:212/1140 - (18%)
Similarity:321/1140 - (28%) Gaps:488/1140 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 TDSGNEDLHHRKGLGSPGQSDGATPTTASCQHIKKAVDAARLRRLLKSTGLLYECSQCQKLGKTA 80
            ||||  ||                     |.|:....:..:...:.||.|   .|..|       
Zfish    35 TDSG--DL---------------------CPHLDSIGEVTKEELIQKSKG---TCQSC------- 66

  Fly    81 GSAAGAGASEGAVGPGGNPVTFEFDNTLWLCLKCGSQL--CGRARHKHALEHYQTPHSDSHALAM 143
                      |..||           .||.||:|....  ||.:...|:..|.|   :..|.|.:
Zfish    67 ----------GVGGP-----------NLWACLQCDCPYVGCGESYSDHSTIHAQ---AKKHNLTV 107

  Fly   144 NTRSFDIWCYECDMKICSNLRKNLLECVELVKKLAQKPPTSTVTPSTPTISYIEEKLKAALEHLT 208
            |..:|.:|||.|:.::                                   ::|.|         
Zfish   108 NLTTFRVWCYVCEREV-----------------------------------FLEPK--------- 128

  Fly   209 PIVPMTGGSFDDSSSRGSLAAAGGGGGVGSSRNRQVAIPMPPPEPSSGLSTSDSLTSVPGMAKRI 273
            |:.|:                        ||.:|    ..|..:.....:|...|.:||...   
Zfish   129 PVTPV------------------------SSAHR----CKPHDQDPVSQTTCYPLKAVPIAV--- 162

  Fly   274 DQYSATTNGNTGNKRLLTLETPRIENERLPR-VRGLTNLGNTCFFNAVMQCLAQTPFLLSVLKEL 337
                |...|:...           |:|..|| :.|:.|:||:|:.||.:|.|:..|.|....::.
Zfish   163 ----ADEEGSESE-----------EDELKPRGLTGMKNIGNSCYMNAALQALSNCPPLTQFFQDC 212

  Fly   338 SEPGEEFILPGGTFTIKDKGDIELPMIKGTLSSWGGLTAALANALEEL--QAGGSVFTPRKLFDR 400
            |         |...|.|..                .|..:....:.||  :...|...|..||..
Zfish   213 S---------GLVRTDKKP----------------ALCKSYQKLISELWHKKRPSYVVPTTLFHG 252

  Fly   401 LCVKCPQFTGGDQHDAHELLRQLLESVRNEDLKRYQRVILQNLGYKDQDVNSVSEEMRQKCKIYG 465
            :.:..|.|.|..|.|..|.||.|::.: :|:||.                           .::.
Zfish   253 IKLVNPMFRGYAQQDTQEFLRCLMDQL-HEELKE---------------------------PLFD 289

  Fly   466 NQAGDRILRPEQVFRGFLVSTLTCQDCHNVSSRHEYFLDMSLPVAVEKPQPPQRRKPSPELSLTS 530
            ...|...:.|:          |:...|:.|..                     .|.||.:..|:.
Zfish   290 CSGGISEVEPD----------LSLDSCNLVDG---------------------DRSPSEDEFLSC 323

  Fly   531 SSSSVTPSTGQPTINTKFTDGSVNFTASSPSFFLHAHEAASLGPSKSQVKKEKERQRKAKRAAKK 595
            .|.|          .::..||.   .|...:..|...|..::..:....:||:.::|:.:...: 
Zfish   324 DSGS----------GSERGDGE---RAGGEAELLIQDECVAVRGTGGISEKERLKERRGEERTR- 374

  Fly   596 RQKSSLNLNGNDSGNGNELAESVDQDDASLASLGAGDGQANDGLEQTNGQTEDSTTSSVTTSEHS 660
                             |:.|..|.|.|      |.||||       ..:||.:|.:        
Zfish   375 -----------------EMDEDADVDTA------AQDGQA-------ERETETATPA-------- 401

  Fly   661 DADVEDNLVEDTAAPSTNNV-PSSTASLTAPSKTYMDSNGNAQPPGEKRDDTPEHMDKDSLEE-- 722
                       ||.|:..|. |.:.||:..||               .|..:|.|    |::|  
Zfish   402 -----------TAVPAPGNTEPDNEASMHCPS---------------SRPCSPAH----SVQELH 436

  Fly   723 ------DENDSGIATSPAPTATNS----STSTSATGNNNSVAGSGLSGSSGALEDPLAPASLVTA 777
                  ....|.:.|.|..|...:    ||.........||......||.      |:....:|.
Zfish   437 SRLSSNPPRSSPLRTGPTYTFKKAQMLLSTKKKKQSRFRSVISDIFDGSI------LSLVQCLTC 495

  Fly   778 GLSEKGASVIRQVSVGAEQGASNGTEDADGEAKAIEQPEKTPSQAQAMAQAQARTKRVRTQSYS- 841
            ..........:.:|:...     |.||......:|.|  ..|.:|           .|.|..|: 
Zfish   496 DRVSTTVETFQDLSLPIP-----GKEDLAKLHSSIHQ--SAPVKA-----------GVCTDGYAA 542

  Fly   842 -DWSTTIAPRYQCEDGEC----------SVQSCLNNFTAVELMTGQNKVGCDSCTQRINGSDPKA 895
             .|.:.|....:.....|          :::.||..|.|.:.:.|.|...|:.|.:..||     
Zfish   543 QGWISYIMDSIRRFVVSCIPSWFWGPMVTLEDCLAAFFAADELKGDNMYSCERCKKLRNG----- 602

  Fly   896 KSVNTNATKQLLVSSPPAVLILHLKRFQLGPRCIFRKLTRPVSYP-NLLDIAAFCGSKVKNLPNI 959
                   .|...|...|.:|.:|||||:......| |:...||:| ..||:..|.   .|..|: 
Zfish   603 -------VKYCKVLRLPEILCIHLKRFRHEVMYSF-KINSHVSFPLEGLDLKPFL---AKESPS- 655

  Fly   960 DRKQKKLLYALYGVVEHSGGMYGGHYTAYVKVRPKVAPGDKRWKFLPHGSKAELDQDDDQLKKLE 1024
                :...|.|..|:.|.|....|||.||.:                                  
Zfish   656 ----QITTYDLLSVICHHGTAGSGHYIAYCQ---------------------------------- 682

  Fly  1025 ELLAKEKAREQHLKVLDDSDDFSNSSSNSSTSDESQTPATPLEEQQTQQAQQPQQPQQLEEAANV 1089
                         .|::                                                
Zfish   683 -------------NVIN------------------------------------------------ 686

  Fly  1090 RAPPGKWYYVSDSRVQEVSEDTALKAQAYLLFYER 1124
                |:||...|..|.||.|.....|:||:|||.:
Zfish   687 ----GQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp16-45NP_001284890.1 zf-UBP 108..159 CDD:280334 18/52 (35%)
Peptidase_C19 307..>512 CDD:271592 39/206 (19%)
Peptidase_C19K <849..1123 CDD:239132 54/284 (19%)
usp20XP_009299732.1 zf-UBP 63..123 CDD:280334 23/90 (26%)
UCH 180..715 CDD:278850 158/844 (19%)
Peptidase_C19 180..>285 CDD:271592 33/130 (25%)
Peptidase_C19R 476..716 CDD:239139 73/383 (19%)
DUSP 737..818 CDD:197831
DUSP 843..927 CDD:197831
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5560
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.