DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp16-45 and Usp4

DIOPT Version :9

Sequence 1:NP_001284890.1 Gene:Usp16-45 / 31458 FlyBaseID:FBgn0029763 Length:1126 Species:Drosophila melanogaster
Sequence 2:XP_006511759.1 Gene:Usp4 / 22258 MGIID:98905 Length:967 Species:Mus musculus


Alignment Length:1008 Identity:205/1008 - (20%)
Similarity:326/1008 - (32%) Gaps:366/1008 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 LVKKLAQKPPTSTVTPSTPTIS-YIEEKLKAALEHLTPIVPMTGGSFDDSSSRGSLAAAGGGGGV 236
            |..|.:..|..:..|.|.|:.| |.  .:.|:|        :..|...:||...|...:.||.|.
Mouse   229 LQSKSSTAPSRNFTTSSKPSASPYC--SVSASL--------IANGDSTNSSGMHSSGVSRGGSGF 283

  Fly   237 GSSRNRQVAIPMPPPEPSSGLSTSDSLTSVPGMAKRIDQYSATTNGNTGNKRLLTLETPRIENER 301
            .:|.|.|        ||.|                                       |.|:   
Mouse   284 SASYNCQ--------EPPS---------------------------------------PHIQ--- 298

  Fly   302 LPRVRGLTNLGNTCFFNAVMQCLAQTPFLLSVLKELSEPGEEFILPGGTFTIKDKGDIELPMIKG 366
             |.:.||.|||||||.|:.:|||:.|           .|..|:.|       ||:.:.|:.. ..
Mouse   299 -PGLCGLGNLGNTCFMNSALQCLSNT-----------APLTEYFL-------KDEYEAEINR-DN 343

  Fly   367 TLSSWGGLTAALANALEELQAGGSVFTPRKLFDRLCVK-CPQFTGGDQHDAHELLRQLLESVRNE 430
            .|...|.:..|.|..::::.:|.......::|.....: .|||:|..|.|:.|||..:|:.: :|
Mouse   344 PLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGL-HE 407

  Fly   431 DLKRYQRVILQNLGYKDQDVNSVSEEMRQKCKIYGNQAGDRILRPEQV----FRGFLVSTLTCQD 491
            ||.|    :.:....:.:|.|...:.:..| :.:.|..    ||.:.|    |.|...|||.|.:
Mouse   408 DLNR----VKKKPYLEPKDANGRPDAVVAK-EAWENHR----LRNDSVIVDTFHGLFKSTLVCPE 463

  Fly   492 CHNVSSRHEYFLDMSLPVAVEK------------PQ--PPQRRKPSPEL-SLTSSSSSVTPSTGQ 541
            |..||...:.|..::||:.::|            ||  |.|.|...|.: :::....:::..:|.
Mouse   464 CAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQCRPIQYRVTVPLMGAISDLCEALSKLSGI 528

  Fly   542 PTINTKFTD--------------GSVNFTASSPSFFLHAHEAASLGPSKSQ-------VKKEKER 585
            ...|...||              |..:.|   |...:..:|..:.....|:       .:::|.|
Mouse   529 AAENMVVTDVYNHRFHKIFQMDEGLSHIT---PRDDIFVYEVCNTSMDGSECITLPVYFREKKSR 590

  Fly   586 QRKAKRAAKKRQKSSLNLNGNDSGNGNELAESVDQDDASLASLGAGDGQANDGLEQTNGQTEDST 650
            ...|...|..              .|..|..||.:...:|.||                  ..:.
Mouse   591 PSSASSGAVL--------------YGQPLLVSVPKHKLTLESL------------------YQAV 623

  Fly   651 TSSVTTSEHSDADVEDNLVEDTAAPSTNNVPSSTASLTAPSKTYMDSNGNAQPPGEKRDDTPEHM 715
            ...:  |.:....:.|..:.....|...|  .|.:|.....:..||.    |..|:::....|..
Mouse   624 CDRI--SRYIKQPLPDEFLSSPLEPGACN--GSRSSYEGDEEEEMDH----QEEGKEQLSEVEGS 680

  Fly   716 DKDSLEEDENDSGIATSPAP----TATNSSTSTSATGNNNSVAGSGLSGSSGALEDPLAPASLVT 776
            .:|...:|.::|.......|    ..|.|..::..|.:.||:|..|               .|:.
Mouse   681 GEDDQGDDHSESAQKVKGQPRHKRLFTFSLVNSCGTADINSLATDG---------------KLLK 730

  Fly   777 AGLSEKGASVIRQVSVGAEQGASNGTEDADGEAKAI---EQPEK--TPSQAQ---AMAQAQARTK 833
              |:.:....|                |.|.|.:::   ||..:  :|...:   :|:|.|.:.|
Mouse   731 --LNSRSTLAI----------------DWDSETRSLYFDEQESECFSPQACEKHLSMSQPQKKKK 777

  Fly   834 RVRTQSYSDWSTTIAPRYQCEDGECSVQSCLNNFTAVELMTGQNKVGCDSCTQRINGSDPKAKSV 898
                                  ...:::.|:..||.:|.:...:...|.:|.:            
Mouse   778 ----------------------AAVALRECIELFTTMETLGEHDPWYCPTCKK------------ 808

  Fly   899 NTNATKQLLVSSPPAVLILHLKRFQLGPRCIFRKLTRPVSYP-NLLDIAAF-CGSKVKNLPNIDR 961
            :..|||:..:.|.|.:|::|||||... |....||...|.:| ..|:::.| |          ||
Mouse   809 HQQATKKFDLWSLPKILVVHLKRFSYN-RYWRDKLDTVVEFPVRALNMSEFVC----------DR 862

  Fly   962 KQKKLLYALYGVVEHSGGMYGGHYTAYVKVRPKVAPGDKRWKFLPHGSKAELDQDDDQLKKLEEL 1026
            ..:..:|.|..|..|.|.|..||||||.|.|..                                
Mouse   863 SARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLN-------------------------------- 895

  Fly  1027 LAKEKAREQHLKVLDDSDDFSNSSSNSSTSDESQTPATPLEEQQTQQAQQPQQPQQLEEAANVRA 1091
                                                                             
Mouse   896 ----------------------------------------------------------------- 895

  Fly  1092 PPGKWYYVSDSRVQEVSEDTALKAQAYLLFYER 1124
              |||||..||.|...|||..:...||:|||:|
Mouse   896 --GKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp16-45NP_001284890.1 zf-UBP 108..159 CDD:280334
Peptidase_C19 307..>512 CDD:271592 59/209 (28%)
Peptidase_C19K <849..1123 CDD:239132 56/275 (20%)
Usp4XP_006511759.1 UBP12 35..927 CDD:227847 205/1008 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5560
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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