DRSC/TRiP Functional Genomics Resources

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Protein Alignment SK and Kcnn1

DIOPT Version :9

Sequence 1:NP_001284887.1 Gene:SK / 31456 FlyBaseID:FBgn0029761 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_001350336.1 Gene:Kcnn1 / 84036 MGIID:1933993 Length:538 Species:Mus musculus


Alignment Length:619 Identity:321/619 - (51%)
Similarity:397/619 - (64%) Gaps:106/619 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   352 SHSHTVPNVSLKQLRESSGDGIAGIAADSLRINGGMRPFKQLRKPA---------STLSIPGSMK 407
            ||||   |.|:.| ...||.|..|  .:.:....| ||.:..:.|.         ..||..||..
Mouse     3 SHSH---NGSVGQ-PLGSGPGFLG--WEPVDPEAG-RPLQPTQGPGLQMVAKGQPVRLSPGGSRG 60

  Fly   408 TPSIANREQISSGCNEEAAEALVGIHSDYPRYMEERALTGGNTSRKPSTNSAKHKPNVGYRLGKR 472
            .|.....|       ||..|             ||...||   |.||        |.|.:|||.|
Mouse    61 HPQEQEEE-------EEEEE-------------EEEDKTG---SGKP--------PTVSHRLGHR 94

  Fly   473 KALFEKRKRISDYALVMGMFGIIVMVIENELSSAGVYTKASFYSTALKTLISVSTVILLGLIVAY 537
            :||||||||:|||||:.|||||:|||.|.|| |.|||||.|..|.|||.|||:||||||||::.|
Mouse    95 RALFEKRKRLSDYALIFGMFGIVVMVTETEL-SWGVYTKESLCSFALKCLISLSTVILLGLVILY 158

  Fly   538 HALEVQVRLFMIDNCADDWRIAMTWQRISQIGLELFICAIHPIPGEYYFQWTTKLANKNKTIGTE 602
            ||.|:|  ||::||.||||||||||:|:|.|.|||.:|||||:||.|.|.||.:||       ..
Mouse   159 HAREIQ--LFLVDNGADDWRIAMTWERVSLISLELVVCAIHPVPGHYRFTWTARLA-------FS 214

  Fly   603 MVP------YDVALSLPMFLRLYLICRVMLLHSKLFTDASSRSIGALNRINFNTRFVLKTLMTIC 661
            :||      .||.||:||||||||:.|||||||::||||||||||||||:.||||||.|||||||
Mouse   215 LVPSAAEADLDVLLSIPMFLRLYLLARVMLLHSRIFTDASSRSIGALNRVTFNTRFVTKTLMTIC 279

  Fly   662 PGTVLLVFMVSLWIIASWTLRQCERFHDEEH--ANLLNAMWLIAITFLSVGFGDIVPNTYCGRGI 724
            ||||||||.||.||:|:||:|.|||:||::.  :|.|.|||||:|||||:|:||:||:||||:|:
Mouse   280 PGTVLLVFSVSSWIVAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGV 344

  Fly   725 AVSTGIMGAGCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRL 789
            .:.|||||||||||:||||:||||||:|||||||||||||||||:||||||||||||||||||||
Mouse   345 CLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRL 409

  Fly   790 VKRVNPGRVRTHQRKFLLAIY---ALRKVKMDQRKLMDNANTITDMAKTQNTVYEIISDMSSRQD 851
            ||:.:.||||.||||||.||:   .||.||::|.|:.|.|||:.::||.|:..||::|::.::|:
Mouse   410 VKKPDQGRVRKHQRKFLQAIHQAQKLRSVKIEQGKVNDQANTLAELAKAQSIAYEVVSELQAQQE 474

  Fly   852 AIEERLTNLEDKMQSIQEHMESLPDLLSRCLTQHQERIEQRRNFLHPDTAAVAPIQAPTPQSMFN 916
            .:|.||..||.::..:...:::||.|:::                     |:.|:..|.|.....
Mouse   475 ELEARLAALESRLDVLGASLQALPGLIAQ---------------------AICPLPPPWPGPGHL 518

  Fly   917 AAPMLFPHSSVPSSNNAAATYHWPTSPILPPISS 950
            |.....|.|            ||     ||.:.|
Mouse   519 ATATQSPQS------------HW-----LPTMGS 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKNP_001284887.1 SK_channel 472..582 CDD:281522 77/109 (71%)
Ion_trans_2 669..748 CDD:285168 53/80 (66%)
CaMBD 762..834 CDD:280961 51/74 (69%)
Kcnn1NP_001350336.1 SK_channel 94..201 CDD:367547 77/109 (71%)
Ion_trans_2 289..368 CDD:369572 52/78 (67%)
Segment S6. /evidence=ECO:0000255 344..364 14/19 (74%)
Calmodulin-binding. /evidence=ECO:0000250 382..461 54/78 (69%)
CaMBD 382..457 CDD:367232 51/74 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839448
Domainoid 1 1.000 168 1.000 Domainoid score I3817
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 612 1.000 Inparanoid score I908
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265878at33208
OrthoFinder 1 1.000 - - FOG0001440
OrthoInspector 1 1.000 - - otm43318
orthoMCL 1 0.900 - - OOG6_102955
Panther 1 1.100 - - O PTHR10153
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4617
SonicParanoid 1 1.000 - - X1159
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.930

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