DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SK and kcnn4

DIOPT Version :9

Sequence 1:NP_001284887.1 Gene:SK / 31456 FlyBaseID:FBgn0029761 Length:1174 Species:Drosophila melanogaster
Sequence 2:XP_005158211.1 Gene:kcnn4 / 568363 ZFINID:ZDB-GENE-131127-192 Length:481 Species:Danio rerio


Alignment Length:468 Identity:196/468 - (41%)
Similarity:285/468 - (60%) Gaps:36/468 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 GNTS--RKPSTNSAKH-KPNVG---YRLGKRKALFEKRKRISDYALVMGMFGIIVMVIENELSSA 506
            |.|:  |.|.::..|. .|..|   |||..||.|.|.::|:..:||...:.||::||:..||...
Zfish    27 GETTEIRVPLSHMGKRMSPIEGLNLYRLRDRKFLLEDKRRLCAWALGTALLGILLMVLHAELCPV 91

  Fly   507 GVYTKASFYSTALKTLISVSTVILLGLIVAYHALEVQVRLFMIDNCADDWRIAMTWQRISQIGLE 571
             ||...|.|:.::..|||.||..||.||:|:|..:  :|||:||:...|||||||..|:..|.||
Zfish    92 -VYQPGSIYALSINGLISFSTGCLLILIIAFHYKD--IRLFIIDHNQVDWRIAMTSYRVLGISLE 153

  Fly   572 LFICAIHPI------PGEYYFQWTTKLANKNKTIGTE-----------MVPYDVALSLPMFLRLY 619
            |.:|||||:      .||      .||..|.:...:.           |:..::.||..||||||
Zfish   154 LMVCAIHPVVIYLRPDGE------DKLGRKPEQNSSTPLCLSSSHREVMLDVELLLSALMFLRLY 212

  Fly   620 LICRVMLLHSKLFTDASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQC 684
            |:.|.:|||||:...||.||||:||.|||..|||||.||...|...||||::..|:.|||.||.|
Zfish   213 LVHRAVLLHSKVLLSASYRSIGSLNNINFTFRFVLKVLMNKYPARTLLVFIMFFWLSASWMLRLC 277

  Fly   685 ERFHDEEHANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLEL 749
            ||....:...:..|:||||||||:||:||:.|:|.||:.:.:.||:||..|||:||||:::||.|
Zfish   278 EREKQVDTGGMDTALWLIAITFLTVGYGDVSPHTSCGKVVCLFTGVMGVACTAMLVAVMTKKLAL 342

  Fly   750 TRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIYALRK 814
            .:.|||||.||||.|::||:::||||||||.||:::.|:  .:...|..|.|||..|.||...|.
Zfish   343 NKGEKHVHFFMMDIQISKRIRHAAANVLRECWLLHRTTQ--TKYTSGEHRHHQRCLLEAIRVFRH 405

  Fly   815 VKMDQRKLMDNANTITDMAKTQNTVYEIISDMSSRQDAIEERLTNLEDKMQSIQEHMESLPDLLS 879
            :::.||||.|.|:.:.|::|.|..:.::.::.:|....:|:|:.::|.|:..::...::..:||:
Zfish   406 LRLKQRKLRDYASEMVDLSKMQMIMCDLSANWNSSYHELEQRIISMEQKLDELRRSFQNTSELLT 470

  Fly   880 RCLTQHQERIEQR 892
            :.|  |..|::.|
Zfish   471 QAL--HHRRLDYR 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKNP_001284887.1 SK_channel 472..582 CDD:281522 50/115 (43%)
Ion_trans_2 669..748 CDD:285168 39/78 (50%)
CaMBD 762..834 CDD:280961 31/71 (44%)
kcnn4XP_005158211.1 SK_channel 57..162 CDD:281522 49/107 (46%)
Ion_trans <194..337 CDD:278921 76/142 (54%)
Ion_trans_2 <290..340 CDD:285168 28/49 (57%)
CaMBD 355..425 CDD:280961 31/71 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583571
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3684
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265878at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10153
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.850

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