DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SK and Kcnn4

DIOPT Version :9

Sequence 1:NP_001284887.1 Gene:SK / 31456 FlyBaseID:FBgn0029761 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_001156982.1 Gene:Kcnn4 / 16534 MGIID:1277957 Length:425 Species:Mus musculus


Alignment Length:435 Identity:179/435 - (41%)
Similarity:252/435 - (57%) Gaps:47/435 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   469 LGKRKALFEKRKRISDYALVMGMFGIIVMVIENE-LSSAGVYTKASFYSTALKTLISVSTVILLG 532
            |.:||.|.|:.||::.:|||:...||.:||:..| |...|  .|...|...:|.||::||..||.
Mouse    12 LRRRKRLLEQEKRVAGWALVLAGTGIGLMVLHAEMLWFLG--CKWVLYLLLVKCLITLSTAFLLC 74

  Fly   533 LIVAYHALEVQVRLFMIDNCADDWRIAMTWQRISQIGLELFICAIHPIP---------GEYYFQW 588
            |||.:||.|||  |||.||...|||:|:|.::::||.|||.:|.:||:|         ||     
Mouse    75 LIVVFHAKEVQ--LFMTDNGLRDWRVALTRRQVAQILLELLVCGVHPVPLRSPHCALAGE----- 132

  Fly   589 TTKLANKNKTIGTEMVPY-------DVALSLPMFLRLYLICRVMLLHSKLFTDASSRSIGALNRI 646
                       .|:..|:       :..|||.|.|||||:.|.:||.|.:..:||.|||||||::
Mouse   133 -----------ATDAQPWPGFLGEGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV 186

  Fly   647 NFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFHDEEHANLLNAMWLIAITFLSVGF 711
            .|...||.|..|...||.:||...:.||:..:|.|...||.......:|.:.:|||.||||::|:
Mouse   187 RFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLTDTLWLIPITFLTIGY 251

  Fly   712 GDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKNAAANV 776
            ||:||.|..|:.:.:.||:||..|||||||||:||||..:|||||||||||....|.:|.:||.:
Mouse   252 GDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDIHYAKEMKESAARL 316

  Fly   777 LRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYE 841
            |:|.|:.|||||   |.:....|.||||.|.||:..|:|::..|||.:..|::.|::|....:.:
Mouse   317 LQEAWMYYKHTR---RKDSRAARRHQRKMLAAIHTFRQVRLKHRKLREQVNSMVDISKMHMILCD 378

  Fly   842 IISDMSSRQDAIEERLTNLEDKMQSIQEHMESLPDLLSRCLTQHQ 886
            :...:||...|:|:|:..|..|       :::|.:||...|.|.|
Mouse   379 LQLGLSSSHRALEKRIDGLAGK-------LDALTELLGTALQQQQ 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKNP_001284887.1 SK_channel 472..582 CDD:281522 52/119 (44%)
Ion_trans_2 669..748 CDD:285168 36/78 (46%)
CaMBD 762..834 CDD:280961 29/71 (41%)
Kcnn4NP_001156982.1 SK_channel 15..121 CDD:367547 51/109 (47%)
Ion_trans_2 <235..288 CDD:369572 30/52 (58%)
Calmodulin-binding. /evidence=ECO:0000250 284..345 34/63 (54%)
CaMBD 302..374 CDD:198121 30/74 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839449
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3684
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265878at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10153
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.850

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