DRSC/TRiP Functional Genomics Resources

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Protein Alignment SK and kcnn4

DIOPT Version :9

Sequence 1:NP_001284887.1 Gene:SK / 31456 FlyBaseID:FBgn0029761 Length:1174 Species:Drosophila melanogaster
Sequence 2:XP_004916452.1 Gene:kcnn4 / 101732300 XenbaseID:XB-GENE-1013002 Length:474 Species:Xenopus tropicalis


Alignment Length:433 Identity:186/433 - (42%)
Similarity:272/433 - (62%) Gaps:24/433 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 GNTSRKPSTNSA---KHK-------PNVGYR-LGKRKALFEKRKRISDYALVMGMFGIIVMVIEN 501
            |:...|..|..|   .||       ||...| ..:||.|.|.:|:||.:.:::.:.|||:||:..
 Frog    38 GDMQAKEPTEVAILNSHKVHIVRDDPNENLRKFKRRKGLVETKKKISAWTILVALLGIILMVVHT 102

  Fly   502 ELSSAGVYTKASF--YSTALKTLISVSTVILLGLIVAYHALEVQVRLFMIDNCADDWRIAMTWQR 564
            ||.   .|:|..:  |...:|..||:|||||:.||:|:|..|:|:  ||.||...|||||:..:.
 Frog   103 ELM---WYSKCEWFPYLFLVKCSISISTVILIILIIAFHLKEIQI--FMNDNSLQDWRIAINAKN 162

  Fly   565 ISQIGLELFICAIHPIPGEYYFQWTTKLANKNKTIGTEMVPYDVALSLPMFLRLYLICRVMLLHS 629
            |..|.||:.:|||||.|  |..|...:..|.::.: ..:...|:.||:.||||:||:.|.:||:|
 Frog   163 IGWILLEVVVCAIHPFP--YVLQCVEEQGNNSEEL-EFLSEADIFLSILMFLRVYLLPRTVLLYS 224

  Fly   630 KLFTDASSRSIGALNRINFNTRFVLKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFHDEEHAN 694
            ::..|.|.||||:||:|.|..:||:|.||..|||.|||:..:|||:::||.|..|||.......:
 Frog   225 RVLGDTSYRSIGSLNKIKFQYKFVMKVLMNTCPGKVLLILSISLWVVSSWVLSVCERKKQVPTGD 289

  Fly   695 LLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLELTRAEKHVHNF 759
            :.||:|||.||||::|:||:||||.||:.:.:|||:||.|||||:|||.::|||.||||||||.|
 Frog   290 MTNALWLIPITFLTIGYGDMVPNTVCGKLVCLSTGVMGVGCTALIVAVAAQKLEFTRAEKHVHTF 354

  Fly   760 MMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIYALRKVKMDQRKLMD 824
            |||.:..|::|.||||||.|.||:::||   |:.:..:.|.|||..|.||:..|:.::..:.|.|
 Frog   355 MMDIRCMKQIKCAAANVLGEAWLLHRHT---KKGDKAQTRQHQRNLLRAIHVFRRSRISHKNLKD 416

  Fly   825 NANTITDMAKTQNTVYEIISDMSSRQDAIEERLTNLEDKMQSI 867
            ..|.:.|::|.|..:.::..:.||....:|:|:..|:.|:..|
 Frog   417 QMNAMVDISKMQMIMEDLDLNFSSSHRELEKRIDQLDKKLDDI 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKNP_001284887.1 SK_channel 472..582 CDD:281522 49/111 (44%)
Ion_trans_2 669..748 CDD:285168 41/78 (53%)
CaMBD 762..834 CDD:280961 27/71 (38%)
kcnn4XP_004916452.1 SK_channel 73..180 CDD:367547 50/113 (44%)
Ion_trans_2 266..343 CDD:369572 41/76 (54%)
CaMBD 357..426 CDD:367232 27/71 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265878at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10153
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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