DRSC/TRiP Functional Genomics Resources

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Protein Alignment XRCC1 and Xrcc1

DIOPT Version :9

Sequence 1:NP_572217.1 Gene:XRCC1 / 31451 FlyBaseID:FBgn0026751 Length:614 Species:Drosophila melanogaster
Sequence 2:XP_038948767.1 Gene:Xrcc1 / 84495 RGDID:619823 Length:639 Species:Rattus norvegicus


Alignment Length:621 Identity:179/621 - (28%)
Similarity:264/621 - (42%) Gaps:215/621 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 EFEEPQQITGIDIGNEHAAFIEVLV--SRTGCQA--DDFRELLLSSSFMTPIESKNSSNPNRVRC 108
            :.|:.:||..:||||:.:||:||||  |..|..|  .|:..||::||||:|.||::.|||||||.
  Rat    57 QLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGATAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRI 121

  Fly   109 FSSTSLAESALPEKWKLLQIVCTQPFNRHVPYGLSFVKVHVVAAAAPKVKSLVPQ--GVMQFGTF 171
            |....|..:|..::|..::|||:||:::..||||||||.|   :...|.::..|.  .|.:.|.|
  Rat   122 FGPDKLVRAAAEKRWDRVKIVCSQPYSKDSPYGLSFVKFH---SPPDKDEAEAPSQVTVTKLGQF 183

  Fly   172 KLREES-------PDSETDNQVNRFHSWKKQTQHKSPAISATSTAAAIRDAGSTALRRLSAGKVS 229
            :::||.       |.:...|::|:                 .::|:|...||.           |
  Rat   184 RVKEEDDSANSLRPGALFFNRINK-----------------AASASASDPAGP-----------S 220

  Fly   230 SLAASPKTSTSPSPVLNALRSVSPTPLDAKPLDRNRASLLFGDDDEDVKDAEVNAKKQRLSKHLE 294
            ..||:.:.|::.|       |.||.|                         :|.....:|.   |
  Rat   221 YAAATLQASSAAS-------SASPVP-------------------------KVGGSSSKLQ---E 250

  Fly   295 ADKDRRRLEQEKERESRKKKSSRHSLDKSISKEDKPPAKEHNSSSREKSTAKEEKEQLRKEERSH 359
            ..|.:|:|:                    :..|||.|.                           
  Rat   251 PPKGKRKLD--------------------LGLEDKKPP--------------------------- 268

  Fly   360 SKEEKSRRKEKSKHDHRSSDTSNSKESSRPTAQKRHSSP-------TAVAVTPAKKQKIVDTAIQ 417
                                   ||.|:.|.|.||...|       ...|.|||:|      |:.
  Rat   269 -----------------------SKPSAGPPAPKRPKLPVPSRTPAATPASTPAQK------AVP 304

  Fly   418 YRP----------------LNQLLKGVVLVISGIQNPDRADLRSKAVALGAKYKADWGSGCTHLI 466
            .:|                |.::|:|||:|:||.|||.|::||.||:.|||||:.||....||||
  Rat   305 GKPRGEGTEPRGARAGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLI 369

  Fly   467 CAFKNTPKYNQVKG-KGKIVTRSWIEKCYELKKYLPWRRYAL--------DTNDIGQPESDEELC 522
            |||.|||||:||.| .|:||.:.|:..||.:::.||.|||.:        |..| ...||.|   
  Rat   370 CAFANTPKYSQVLGLGGRIVRKEWVLDCYRMRRRLPSRRYLMAGLGSSSEDEGD-SHSESGE--- 430

  Fly   523 DEATR-PRR------------DSSKDDVAMLEDSKLTALADQNDVEMNPDALSGI--------DT 566
            |||.: ||:            .||.......|::|..:...|::.:.:.:...|.        ||
  Rat   431 DEAPKLPRKRPQPKAKTQAAGPSSPPRPPTPEETKAPSPGPQDNSDTDGEQSEGRDNGAEDSGDT 495

  Fly   567 EDELQRVAEENKTKKAKLRTTVKTKSQDIYEVSTDE 602
            ||||:|||::.:.::.   ...:...:|.|..||||
  Rat   496 EDELRRVAKQREQRQP---PAPEENGEDPYAGSTDE 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XRCC1NP_572217.1 XRCC1_N 1..144 CDD:280080 46/99 (46%)
BRCT 420..494 CDD:278934 43/90 (48%)
Xrcc1XP_038948767.1 XRCC1_N <57..160 CDD:396415 49/102 (48%)
PHA03247 <237..359 CDD:223021 48/225 (21%)
BRCT_XRCC1_rpt1 330..398 CDD:349357 40/67 (60%)
TFIIF_alpha <414..>540 CDD:310411 31/122 (25%)
BRCT_XRCC1_rpt2 544..637 CDD:349340
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340860
Domainoid 1 1.000 136 1.000 Domainoid score I4817
eggNOG 1 0.900 - - E1_KOG3226
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52684
OrthoDB 1 1.010 - - D248725at33208
OrthoFinder 1 1.000 - - FOG0007184
OrthoInspector 1 1.000 - - oto97192
orthoMCL 1 0.900 - - OOG6_106425
Panther 1 1.100 - - LDO PTHR11370
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6063
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.810

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