DRSC/TRiP Functional Genomics Resources

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Protein Alignment XRCC1 and xndc1n

DIOPT Version :10

Sequence 1:NP_572217.1 Gene:XRCC1 / 31451 FlyBaseID:FBgn0026751 Length:614 Species:Drosophila melanogaster
Sequence 2:XP_031753282.1 Gene:xndc1n / 100491855 XenbaseID:XB-GENE-6033290 Length:448 Species:Xenopus tropicalis


Alignment Length:407 Identity:100/407 - (24%)
Similarity:157/407 - (38%) Gaps:78/407 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYV--VLEFEEPQQITGIDIGNEH 64
            ||.: :.:...||:|..|...|||.|.:.:.|.. :|.|:..::  .|:.|:...|..:||||..
 Frog    40 PITV-RHIVSFSSQDPKHPVENLLSEISAQPWLI-SPRERGGHLRAELQLEKACHIAYVDIGNCG 102

  Fly    65 AAFIEVLVSRTGCQAD-DFRELLLSSSFMTPIESKNSSNPNRVRCFSSTSLAESALPEKWKLLQI 128
            :||:::.|.|:....| .:..||.|::.|:|.:||....||.||.|........|..|:|..::|
 Frog   103 SAFLQIDVGRSSWPLDRPYVTLLPSTTLMSPADSKQRRGPNGVRMFKEGDFLVDASAERWDRVRI 167

  Fly   129 VCTQPFNRHVPYGLSFVKV--------HVVAAAAPKVK---------SLVPQGVMQFGTFKLREE 176
            ..:||||:...:||||::.        |......||.:         |..||  :..||...||.
 Frog   168 SASQPFNKRDLFGLSFIRFRSALEEEQHEAEGPPPKSEDPKMDRTPDSETPQ--LTRGTESRREN 230

  Fly   177 SPDSETDNQVNRFHSWKKQTQHKSPAISATSTAAAIRDAGSTALRRLSAGKVSSLAASPKTSTSP 241
            .|:.|.....||....:......:|| ..:.||..:..|..:..||.         |.......|
 Frog   231 PPEGEGQKSQNRLPPSRVPPHTANPA-CLSRTALMVLTAAKSRKRRF---------ADTTPPAPP 285

  Fly   242 SPVLNALRSVSPTPLDAKP---------------LDRNRASLLFGDDDEDVKDAEVNAK-KQRLS 290
            ||  :.|...||.|..:.|               |.|.|..:       :.....|.|: .:|.:
 Frog   286 SP--HVLGEKSPVPSGSNPAHTPPTPPQKEARNLLGRRRLRM-------EGPPGRVRARGPERQA 341

  Fly   291 KHLEADKDRRRLEQEKERESRKKKS----------------SRHSLDKSISKEDKPPAKEHNSSS 339
            ..:.....||.......|.:.|::.                ..|:   |...||.||.....|.|
 Frog   342 AEMGGPPGRRGHRPRTPRPAGKEQQCSSCPICGGYFQLRYLPSHA---STCGEDPPPRVVSLSLS 403

  Fly   340 REKSTAKEEKEQLRKEE 356
            .:.|::..:.:.:..||
 Frog   404 EDSSSSDTDTDIIIPEE 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XRCC1NP_572217.1 XRCC1_N 1..144 CDD:460356 47/144 (33%)
U2AF_lg 285..>379 CDD:273727 16/89 (18%)
BRCT_XRCC1_rpt1 427..505 CDD:349357
xndc1nXP_031753282.1 XRCC1_N 38..186 CDD:460356 49/147 (33%)
PHA03247 <197..360 CDD:223021 37/183 (20%)
Blue background indicates that the domain is not in the aligned region.

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