DRSC/TRiP Functional Genomics Resources

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Protein Alignment XRCC1 and xrcc1

DIOPT Version :10

Sequence 1:NP_572217.1 Gene:XRCC1 / 31451 FlyBaseID:FBgn0026751 Length:614 Species:Drosophila melanogaster
Sequence 2:XP_031761618.1 Gene:xrcc1 / 100380033 XenbaseID:XB-GENE-968809 Length:651 Species:Xenopus tropicalis


Alignment Length:665 Identity:199/665 - (29%)
Similarity:288/665 - (43%) Gaps:178/665 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFEEPQQITGIDIGNEHA 65
            ||....|.|...||.|..|.|.||||.:..:||:...||||...|:|:||:.:|:..||||||.:
 Frog     1 MPEIKLKHVVSCSSADTTHTAENLLKADTYRKWKAARPGEKQISVILQFEKEEQVHSIDIGNEGS 65

  Fly    66 AFIEVLVSR-TGCQADDFRELLLSSSFMTPIESKNSSNPNRVRCFSSTSLAESALPEKWKLLQIV 129
            ||:||||.. |.....::..||..||||:|.||||.||.||:|.|....|.:.|..:||..::||
 Frog    66 AFVEVLVGHSTSISEQEYEVLLGMSSFMSPSESKNESNLNRLRMFGPDKLVKGAAEKKWDRVKIV 130

  Fly   130 CTQPFNRHVPYGLSFVKVH------VVAAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNR 188
            ||||:.:::.||:||::::      ...|.:|||..|        |.|.::||            
 Frog   131 CTQPYTKNLAYGISFIRLNSPPEDGSPTAPSPKVTKL--------GQFMVKEE------------ 175

  Fly   189 FHSWKKQTQHKSPAISATSTAAAIRDAGSTALRRLSAGKVSSLAASPKTSTSPSPVLNALRSVSP 253
                    ::.||::.          .||....|.|..:|:.....|.|.:..|..|        
 Frog   176 --------ENSSPSMR----------PGSLFFSRTSKPQVTPPKTPPATQSYASATL-------- 214

  Fly   254 TPLDAKPLDRNRASLLFGDDDEDVKDAEVNAKKQRLSKHLEADKDRRRLEQEKERESRKKKSSRH 318
                                 :...:|..:.:||.:.                            
 Frog   215 ---------------------QGTGEASSSTEKQTVK---------------------------- 230

  Fly   319 SLDKSISKEDKPPAKEHNSSSREKSTAKEEKEQLRKEERSHSKEEKSRRKEKSKHDHRSSDTSNS 383
                      .||:   |:..:|.|:.| .|.:..||..|||..:        ||:...|.:|..
 Frog   231 ----------TPPS---NNIPKEPSSGK-RKFEFSKEPSSHSAVK--------KHEVNKSPSSAK 273

  Fly   384 KESSRPTAQK----RHSSPTAVAVTPAKK--QKIVDTAIQYRPLNQLLKGVVLVISGIQNPDRAD 442
            :.:|:|..:|    ..:.|.....:|::|  ||....|.|...|.::|:|.|.|:||.|||.|:|
 Frog   274 ESTSQPAPKKPKVETQTVPPTKKPSPSEKPAQKKSSPAPQQMELGRILQGTVFVLSGFQNPFRSD 338

  Fly   443 LRSKAVALGAKYKADWGSGCTHLICAFKNTPKYNQVKGKGKIVTR-SWIEKCYELKKYLPWRRYA 506
            ||.||:.:||||:.||....|||||||.||||::|||..|.|:.| .||..||:.|:.||:::|.
 Frog   339 LRDKALEMGAKYRPDWTPDSTHLICAFANTPKFSQVKSAGGIIVRKEWILDCYKKKQRLPYKQYL 403

  Fly   507 LDTNDIGQPESDEELCDEATR------------------------------------------PR 529
            |.:.|....|.|:...||..:                                          ||
 Frog   404 LGSADSSSDEEDDSEEDERPKAPHKPTPDPSRTNHKRPSPSPSKVKVKKTPIKSEDEETEDENPR 468

  Fly   530 RDSSKDDVAMLEDSKLTALADQNDVEMNPDAL--SGIDTEDELQRVAEENKTKKAKLRTTVKTKS 592
            ..|||.:....::.:..|..|:.........|  ||.|||:||:|..||.:.|||   ..:|.:.
 Frog   469 IVSSKANNTPKQEDEYNASTDEEATGKRQPHLEDSGEDTEEELRRFHEEKQGKKA---AAIKAEP 530

  Fly   593 QDIYEVSTDEEDYLE 607
            :|.|..||||...:|
 Frog   531 EDPYAGSTDENTDVE 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XRCC1NP_572217.1 XRCC1_N 1..144 CDD:460356 66/143 (46%)
U2AF_lg 285..>379 CDD:273727 16/93 (17%)
BRCT_XRCC1_rpt1 427..505 CDD:349357 44/78 (56%)
xrcc1XP_031761618.1 XRCC1_N 1..148 CDD:460356 68/146 (47%)
PTZ00449 <200..549 CDD:185628 115/428 (27%)
BRCT_XRCC1_rpt1 323..402 CDD:349357 44/78 (56%)
BRCT_XRCC1_rpt2 556..649 CDD:349340
Blue background indicates that the domain is not in the aligned region.

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