DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm3 and mcm4

DIOPT Version :9

Sequence 1:NP_511048.2 Gene:Mcm3 / 31449 FlyBaseID:FBgn0284442 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001005655.1 Gene:mcm4 / 448137 XenbaseID:XB-GENE-1011481 Length:863 Species:Xenopus tropicalis


Alignment Length:880 Identity:247/880 - (28%)
Similarity:386/880 - (43%) Gaps:246/880 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EQFIKDIQREYVDFLDDEED-------QGIYAGHVKD--MIAEKSKRLIVNVN---------DLK 52
            |:|.:.:|| ::|.|..||:       :.||...:::  ::.|.    .:||:         ||.
 Frog   164 EKFQRFVQR-FIDPLAKEEENVGLDLNEPIYMQRLEEINVVGEP----FLNVDCDHLRSFDQDLY 223

  Fly    53 RK---NPQRALGLLSNAADEQLAFGR---ALKEYASTVDPGYAKMHEDLFVGFEGCFGNRHVTPR 111
            |:   .||..:.....||:| :.|.|   ::.|:...|.|..|....::               |
 Frog   224 RQLVCYPQEVIPTFDMAANE-IFFERYPDSILEHQIQVRPYNALKTRNM---------------R 272

  Fly   112 SLTSIYLGNMVCVEGIVTKVSLIRPKVVRSVHYCP----NTRKVMER---------KYTDLTSFE 163
            ||....:..::.:.|:|.:.|.|.|::..:...|.    .||..::|         |:.:.|...
 Frog   273 SLNPEDIDQLITISGMVIRTSQIIPEMQEAFFKCQVCAFTTRVEIDRGRISEPSVCKHCNTTHSM 337

  Fly   164 AVPSGAAYPTKDEDGNLLETEYGLSVYKDHQTLTIQEMPEKAPAGQLPRSVDIVCDDDLVDRCKP 228
            |:                  .:..|::.|.|.:.:||.||..||||.|.:..:...:||||:.:|
 Frog   338 AL------------------IHNRSMFSDKQMIKLQESPEDMPAGQTPHTTILYGHNDLVDKVQP 384

  Fly   229 GDRVQIVGSYRCLPGKRGGYTSGTFRTVLLANNISLLSKESNLDI-------------------- 273
            ||||.:.|.||.:|          .|......|:..:.| :::|:                    
 Frog   385 GDRVNVTGIYRAVP----------IRVNPRVRNVKSVYK-THIDVIHYRKTDAKRLHGIDEDTEQ 438

  Fly   274 ---SREDIMLCKKLAKNNDIFELLSKSLAPSIHGHAYVKQAILCLLLGGVEKILPNGTR--LRGD 333
               :.|.:.:.|:||...||:|.|:.:|||||:.|..:|:.||..|.||..|...:..|  .|.:
 Frog   439 KMFTEERVAMLKELAAKPDIYERLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAE 503

  Fly   334 INVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADR 398
            :|:||.|||..:|||||:||.|..||...|:|:|||.|||||.|..|.||.:..|:.||:||:|.
 Frog   504 VNILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDN 568

  Fly   399 GVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGRYDQYKTPMEN 463
            |:.||||||||::..|:.:||||||..::|:||||...||||.|||||||||..:::..||.:||
 Frog   569 GICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPVESQWNPKKTTIEN 633

  Fly   464 IGLQDSLLSRFDLLFVMLDVIDSDVDQMISDHVVRMHRYRNPKEADGEPLSMGSSYADSLSFVSS 528
            |.|..:|||||||:|:|||..|...|:.::.|:|.:: |::.::                    .
 Frog   634 IQLPHTLLSRFDLIFLMLDPQDETYDRRLAHHLVALY-YQSEEQ--------------------M 677

  Fly   529 SEEKKDTEVYEKYDALLHGKSRQRHEKILSVEFMRKYIHIAKCMKPKLGEQACEAIANEYSRLRS 593
            .||..|..|.:.|                 :.:.|.|::      |:|||:|.:|:...|..:|.
 Frog   678 KEEHLDMAVLKDY-----------------IAYARTYVN------PRLGEEASQALIEAYVDMRK 719

  Fly   594 QEAVETDVARTQPITARTLETLIRLSTAHARARMSKSVTIDDAHAAIELVQFAYFKKVLDKDRPS 658
            ..:....|: ..|   |.||:|||||.|||:.|.|..|...|...|..|.:.|.           
 Frog   720 IGSGRGMVS-AYP---RQLESLIRLSEAHAKVRFSSKVETIDVEEAKRLHREAL----------- 769

  Fly   659 KRRRNSGSDAEDDNGEASSQRSPSRRSKRTRTATVGADSDEEDIEPPQPDAGDLTRRETRRSLPA 723
               :.|.:|                    .||..|                 |::...|..|..|
 Frog   770 ---KQSATD--------------------PRTGIV-----------------DISILTTGMSATA 794

  Fly   724 R----SVAMLMASPSSEEQSVATSTTEPAIISDARLGEFKNNLQRLFREAREQSLALARITTAIN 784
            |    .:|.::      ::.:.:....||:           ..|:||.:.|.||.|..       
 Frog   795 RKRKEELAQVL------KKLIQSKGKTPAL-----------KYQQLFEDLRGQSDAAV------- 835

  Fly   785 VGSQEPFTAGEIEAAVHRMTEDNQIMVADDIVFLI 819
                   |....:.|:|.:.:::.:.|....|.|:
 Frog   836 -------TKDMFDEALHALADEDYLTVTGKTVRLL 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm3NP_511048.2 MCM_N 18..101 CDD:379644 23/106 (22%)
MCM 106..648 CDD:214631 194/579 (34%)
mcm4NP_001005655.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..121
PHA03307 <3..>122 CDD:223039
MCM_N 166..264 CDD:379644 25/103 (24%)
MCM 267..770 CDD:214631 194/608 (32%)
Arginine finger 642..645 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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