DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcm3 and Mcm3

DIOPT Version :9

Sequence 1:NP_511048.2 Gene:Mcm3 / 31449 FlyBaseID:FBgn0284442 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001178734.2 Gene:Mcm3 / 316273 RGDID:1305168 Length:813 Species:Rattus norvegicus


Alignment Length:817 Identity:501/817 - (61%)
Similarity:635/817 - (77%) Gaps:21/817 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IKDIQREYVDFLDDEEDQGIYAGHVKDMIAEKSKRLIVNVNDLKRKNPQRALGLLSNAADEQLAF 73
            :::.||:|:||||||||||||...|:::|::...|||||||||:|||.:||..||:||.:|.:||
  Rat    12 LREAQRDYLDFLDDEEDQGIYQNKVRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAF 76

  Fly    74 GRALKEYASTVDPGYAKMHEDLFVGFEGCFGNRHVTPRSLTSIYLGNMVCVEGIVTKVSLIRPKV 138
            .||||::.:::|..|||.:|:.::|.||.||::||:||:|||.:|..:|||||||||.||:||||
  Rat    77 QRALKDFVASIDATYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKV 141

  Fly   139 VRSVHYCPNTRKVMERKYTDLTSFEAVPSGAAYPTKDEDGNLLETEYGLSVYKDHQTLTIQEMPE 203
            ||||||||.|:|.:||:|:|||:..|.||.:.||||||:.|.|||||||||||||||:|||||||
  Rat   142 VRSVHYCPATKKTIERRYSDLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYKDHQTITIQEMPE 206

  Fly   204 KAPAGQLPRSVDIVCDDDLVDRCKPGDRVQIVGSYRCLPGKRGGYTSGTFRTVLLANNISLLSKE 268
            ||||||||||||::.||||||:.|||||:|:||:|||||||:||||||||||||:|.|:..:||:
  Rat   207 KAPAGQLPRSVDVILDDDLVDKVKPGDRIQVVGTYRCLPGKKGGYTSGTFRTVLIACNVKQMSKD 271

  Fly   269 SNLDISREDIMLCKKLAK--NNDIFELLSKSLAPSIHGHAYVKQAILCLLLGGVEKILPNGTRLR 331
            .....|.:||...||.:|  :.|:||.|::|||||||||.|||:|||||||||||:.|.||:.:|
  Rat   272 IQPAFSADDIAKIKKFSKTRSKDVFEQLARSLAPSIHGHDYVKKAILCLLLGGVERELENGSHIR 336

  Fly   332 GDINVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLA 396
            ||||:||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
  Rat   337 GDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLA 401

  Fly   397 DRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGRYDQYKTPM 461
            |||||||||||||||:||||||||||||||||:||||||.|||||||||||||||||||||||||
  Rat   402 DRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPM 466

  Fly   462 ENIGLQDSLLSRFDLLFVMLDVIDSDVDQMISDHVVRMHRYRNPKEADGEPLSMGSSY----ADS 522
            |||||||||||||||||:|||.:|.:.|:.|||||:|||:||.|.|.||:.|.:|||.    .|.
  Rat   467 ENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMHQYRAPGEQDGDALPLGSSVDILATDD 531

  Fly   523 LSFVSSSEEKKDTEVYEKYDALLHGKSRQRHEKILSVEFMRKYIHIAKCMKPKLGEQACEAIANE 587
            ..|  :.::::||.:|||:|.|||| |:::.||::|..||:||||:||.:||.|.:::...||.|
  Rat   532 PDF--TQDDQQDTRIYEKHDNLLHG-SKKKREKMVSAAFMKKYIHVAKIIKPTLTQESAAYIAEE 593

  Fly   588 YSRLRSQEAVETDVARTQPITARTLETLIRLSTAHARARMSKSVTIDDAHAAIELVQFAYFKKVL 652
            |||||||:::.:|.|||.|:|||||||||||:||||:|||||:|.:.||..|:||||:|||||||
  Rat   594 YSRLRSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAVELVQYAYFKKVL 658

  Fly   653 DKDRPSKRRRNSGSDAEDDNGEASSQRSPSRRSKRTRTATVGADSDEEDIEPPQPDAGDLTRRET 717
            :|::..|:.....||.||:..::..:.:...|.:|...|..|...|..|..            |.
  Rat   659 EKEKKRKKPSEDESDLEDEEEKSQEEDTEQTRKRRKTQAKDGESYDPYDFS------------EA 711

  Fly   718 RRSLPARSVAMLMASPSSEEQSVATSTTEPAIISDARLGEFKNNLQRLFREAREQSLALARITTA 782
            .|.:|.........|....::|..|..::...:|::||..||..|..:|:||..||:.:..:|.:
  Rat   712 EREMPQVHTPKTDDSQEKTDESQETQESQKVELSESRLKAFKAALLEVFQEAHAQSVGMIHLTES 776

  Fly   783 INVGSQEPFTAGEIEAAVHRMTEDNQIMVADDIVFLI 819
            ||...:|||::.||:|::.||.:|||:||::.|||||
  Rat   777 INRNKEEPFSSEEIQASLSRMQDDNQVMVSEGIVFLI 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm3NP_511048.2 MCM_N 18..101 CDD:379644 45/82 (55%)
MCM 106..648 CDD:214631 393/547 (72%)
Mcm3NP_001178734.2 MCM_N 17..129 CDD:291233 62/111 (56%)
MCM 109..654 CDD:214631 396/550 (72%)
P-loop_NTPase 340..479 CDD:304359 134/138 (97%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353447
Domainoid 1 1.000 374 1.000 Domainoid score I852
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1791
Inparanoid 1 1.050 990 1.000 Inparanoid score I290
OMA 1 1.010 - - QHG53768
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 1 1.000 - - FOG0004045
OrthoInspector 1 1.000 - - oto98030
orthoMCL 1 0.900 - - OOG6_101598
Panther 1 1.100 - - LDO PTHR11630
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2791
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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