DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm3 and Mcm4

DIOPT Version :10

Sequence 1:NP_511048.2 Gene:Mcm3 / 31449 FlyBaseID:FBgn0284442 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_387500.1 Gene:Mcm4 / 29728 RGDID:3060 Length:862 Species:Rattus norvegicus


Alignment Length:855 Identity:245/855 - (28%)
Similarity:377/855 - (44%) Gaps:196/855 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EQFIKDIQREYVDFLDDEED-------QGIYAGHVKDMIAEKSKRLIVNVNDLKR--KN------ 55
            |.|.:.:|. :.|.|..||:       |.:|...:.::.......|.||...:|.  ||      
  Rat   163 EHFQRFLQC-FTDPLAKEEENVGIDITQPLYMQRLGEINITGEPFLNVNCEHIKSFGKNLYRQLI 226

  Fly    56 --PQRALGLLSNAADEQLAFGR---ALKEYASTVDPGYAKMHEDLFVGFEGCFGNRHVTPRSLTS 115
              ||..:.....|.:| :.|.|   ::.|:...|.|..|...:.:          |::.|..   
  Rat   227 SYPQEVIPTFDMAVNE-IFFDRYPDSILEHQIQVRPFNALKTKSM----------RNLNPED--- 277

  Fly   116 IYLGNMVCVEGIVTKVSLIRPKVVRSVHYCP----NTRKVMERKYTDLTSFEAVPSGAAYPTKDE 176
              :..::.:.|:|.:.|.:.|::..:...|.    .||..|:|...      |.|....:.....
  Rat   278 --IDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHTTRVEMDRGRI------AEPCTCVHCHTTH 334

  Fly   177 DGNLLETEYGLSVYKDHQTLTIQEMPEKAPAGQLPRSVDIVCDDDLVDRCKPGDRVQIVGSYRCL 241
            ...|:   :..|::.|.|.:.:||.||..||||.|.:|.:...:||||:.:|||||.:.|.||.:
  Rat   335 SMALI---HNRSLFSDKQMIKLQESPEDMPAGQTPHTVVLFAHNDLVDKVQPGDRVNVTGIYRAV 396

  Fly   242 P---GKRGGYTSGTFRTVL--------LANNISLLSKESNLDI-SREDIMLCKKLAKNNDIFELL 294
            |   ..|.......::|.:        .|..:..|.:|:...: |.:.:.|.|:|::..||:|.|
  Rat   397 PIRVNPRVSNVKSVYKTHIDVIHYRKTDAKRLHGLDEEAEQKLFSEKRVKLLKELSRKPDIYERL 461

  Fly   295 SKSLAPSIHGHAYVKQAILCLLLGGVEKILPNGTR--LRGDINVLLIGDPSVAKSQLLRYVLNTA 357
            :.:|||||:.|..:|:.||..|.||..|...:..|  .|.:||:||.|||..:|||||:||.|..
  Rat   462 ASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLV 526

  Fly   358 PRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVME 422
            ||...|:|:|||.|||||.|..|.||.:..|:.||:||:|.|:.||||||||::..|:.:|||||
  Rat   527 PRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMNESTRSVLHEVME 591

  Fly   423 QGRVTISKAGIHASLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSD 487
            |..::|:||||...||||.||||||||:..:::..||.:|||.|..:|||||||:|:|||..|..
  Rat   592 QQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEA 656

  Fly   488 VDQMISDHVVRMHRYRNPKEADGEPLSMGSSYADSLSFVSSSEEKKDTEVYEKYDALLHGKSRQR 552
            .|:.::.|:|.:: |::.::.:.|.|.|.                    |.:.|.|..|      
  Rat   657 YDRRLAHHLVSLY-YQSEEQVEQEFLDMA--------------------VLKDYIAYAH------ 694

  Fly   553 HEKILSVEFMRKYIHIAKCMKPKLGEQACEAIANEYSRLRSQEAVETDVARTQPITA---RTLET 614
                             ..:.|:|.|:|.:|:...|..:|.       :..::.:.:   |.||:
  Rat   695 -----------------STIMPRLSEEASQALIEAYVNMRK-------IGSSRGMVSAYPRQLES 735

  Fly   615 LIRLSTAHARARMSKSVTIDDAHAAIELVQFAYFKKVLDKDRPSKRRRNSGSDAEDDNGEASSQR 679
            ||||:.|||:.|.|..|...|...|..|.:.|.              :.|.:|            
  Rat   736 LIRLAEAHAKVRFSDKVEAIDVEEAKRLHREAL--------------KQSATD------------ 774

  Fly   680 SPSRRSKRTRTATVGADSDEEDIEPPQPDAGDLTRRETRRSLPARSVAMLMASPSSEEQSVATST 744
                    .||..|              |...||..              |::.|.:.:......
  Rat   775 --------PRTGIV--------------DISILTTG--------------MSATSRKRKEELAEA 803

  Fly   745 TEPAIISDARLGEFKNNLQRLFREAREQSLALARITTAINVGSQEPFTAGEIEAAVHRMTEDNQI 809
            ....|:|..:....|  .|:||.:.|.||      .|||        |....|.|:..:.:|:.:
  Rat   804 LRKLILSKGKTPALK--YQQLFEDIRGQS------DTAI--------TKDMFEEALRALADDDFL 852

  Fly   810 MVADDIVFLI 819
            .|....|.|:
  Rat   853 TVTGKTVRLL 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm3NP_511048.2 MCM_N 13..101 CDD:464206 23/107 (21%)
MCM 106..648 CDD:214631 191/562 (34%)
Mcm4NP_387500.1 MCM_N 162..263 CDD:464206 24/101 (24%)
MCM 266..769 CDD:214631 191/591 (32%)

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