DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm3 and Mcm5

DIOPT Version :9

Sequence 1:NP_511048.2 Gene:Mcm3 / 31449 FlyBaseID:FBgn0284442 Length:819 Species:Drosophila melanogaster
Sequence 2:XP_038953490.1 Gene:Mcm5 / 291885 RGDID:1306616 Length:734 Species:Rattus norvegicus


Alignment Length:829 Identity:250/829 - (30%)
Similarity:376/829 - (45%) Gaps:180/829 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AHEGEQFIKDIQREYVDFLDDEE---DQGIYAGHVKDMIAEKSKR--------LIVNVNDLKRKN 55
            |.||:.....:|:.:.:||....   |:..:....:|.:    ||        :.|.:.||...:
  Rat    21 AEEGQARKSHLQKRFKEFLRQYRVGTDRTGFTFKYRDEL----KRHYNLGEYWIEVEMEDLASFD 81

  Fly    56 PQRALGLLSNAADEQLAFGRALKEYASTVD---PGYAKMHEDLFVGFEGCFGNRHVTP---RSLT 114
            .:.|..|....|:.......|.||.|..|.   |...::.:|:.|..:.     ..:|   |.|.
  Rat    82 EELADYLYKQPAEHLQLLEEAAKEVADEVTRPRPAGDELLQDIQVMLKS-----DASPSSIRILK 141

  Fly   115 SIYLGNMVCVEGIVTKVSLIRPKVVR---SVHYCPNTRKVMERKYTDLTSFEAVP--SGAAYPTK 174
            |..:.::|.:.||:...|.:|.|..|   ....|.||          ||:....|  .|.|.|.|
  Rat   142 SDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNT----------LTNIAMRPGLEGYALPRK 196

  Fly   175 ---DEDGNLLETEYGLSVY---------KDHQTLTIQEMPEKAPAGQLPRSVDIVCDDDLVDRCK 227
               |:.|   ..:..|..|         .|.|||.:||:|:..|.|::||.:.:.||..|.|:..
  Rat   197 CNMDQAG---RPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV 258

  Fly   228 PGDRVQIVGSY--------------RCLPGKRGGY---------TSGTFRTVLLANNISLLSKES 269
            ||:||.|:|.|              |...|.|..|         |.|:.|:  .|.::|...:|.
  Rat   259 PGNRVTIMGIYSIKKFGMNPSKGRDRVGVGIRSSYIRVLGIQVDTDGSGRS--FAGSVSPQEEEE 321

  Fly   270 NLDISREDIMLCKKLAKNNDIFELLSKSLAPSIHGHAYVKQAILCLLLGGVEKILPNGTRLRGDI 334
                       .::||...:|:||:|:|::|||.|...:|:||.|||.||..|.||:|...||||
  Rat   322 -----------FRRLAALPNIYELVSRSVSPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDI 375

  Fly   335 NVLLIGDPSVAKSQLLRYVLNTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRG 399
            |:|::|||..||||||::|...:|..:.|:|:|||..||||:|..|..:....:|.|||||||.|
  Rat   376 NLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGAMVLADGG 440

  Fly   400 VVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGRYDQYKTPMENI 464
            ||||||||||.:.||.||||.|||..::|:||||..:||:|||||||||.|:||:|:.|.. :||
  Rat   441 VVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKGE-DNI 504

  Fly   465 GLQDSLLSRFDLLFVMLDVIDSDVDQMISDHVVRMHRYRNPKEADGEPLSMGSSYADSLSFVSSS 529
            ....::|||||::|::.|..:.:.|.|::.||:.:|                   ..:|:...:.
  Rat   505 DFMPTILSRFDMIFIVKDEHNEERDMMLAKHVITLH-------------------VSALTQTQAV 550

  Fly   530 EEKKDTEVYEKYDALLHGKSRQRHEKILSVEFMRKYIHIAKCMKPKLGEQACEAIANEYSRLRS- 593
            |.:.|....:|:                 :.:.|     |:| .|:|..:|.|.:.|.|..:|| 
  Rat   551 EGEIDLAKMKKF-----------------IAYCR-----ARC-GPRLSAEAAEKLKNRYIIMRSG 592

  Fly   594 --QEAVETDVARTQPITARTLETLIRLSTAHARARMSKSVTIDDAHAAIELVQFAYFKKVLDKDR 656
              |...:.|...:.|||.|.||.::|::.|.::.::....|..|...|:.|.|.:    .||...
  Rat   593 ARQHERDIDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS----TLDAAL 653

  Fly   657 PSKRRRNSGSDAEDDNGEASSQRSPSRRSKR-TRTATVGADSDEEDIEPPQPDAGDLTRRETRRS 720
            ........|...::|      |...||..|: .|...:|:...|..|      ..|.|:::....
  Rat   654 SGNLSGVEGFTTQED------QEMLSRIEKQLKRRFAIGSQVSEHSI------VQDFTKQKYPEH 706

  Fly   721 LPARSVAMLMASPSSEEQSVATSTTEPAIISDARLGEFKNNLQR--LFR 767
             ..|.|..||                      .|.||.::.:||  |:|
  Rat   707 -AIRKVLQLM----------------------LRRGEIQHRMQRKVLYR 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm3NP_511048.2 MCM_N 18..101 CDD:379644 20/96 (21%)
MCM 106..648 CDD:214631 201/587 (34%)
Mcm5XP_038953490.1 MCM_N 32..129 CDD:405270 21/100 (21%)
MCM 133..649 CDD:214631 201/588 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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