DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm3 and mcm-5

DIOPT Version :9

Sequence 1:NP_511048.2 Gene:Mcm3 / 31449 FlyBaseID:FBgn0284442 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_497858.1 Gene:mcm-5 / 175552 WormBaseID:WBGene00003157 Length:759 Species:Caenorhabditis elegans


Alignment Length:708 Identity:235/708 - (33%)
Similarity:350/708 - (49%) Gaps:132/708 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GEQFIKDIQR---EYVDFLDDEEDQG---IYAGHVKDMIAEKSKRLIVNVNDLK----------R 53
            |.:.|.:.::   ::.:|:.|....|   ||...:|........||.:|:|.||          |
 Worm    25 GRELIAEYRQLITQFRNFIRDFSTGGFGMIYRDQLKRNYFSHEYRLEINLNHLKNFDEDIEMKLR 89

  Fly    54 KNPQRALGLLSNAADEQLAFGRALKEYASTVDP-GYAKMHEDLFVGFEGCFGNRHVTPRSLTSIY 117
            |.|.:.|..|..||       :.:.:..:|..| |..|:| |:.|..  .......:.|.:.|..
 Worm    90 KFPGKVLPALEEAA-------KIVADEITTPRPKGEEKLH-DIQVTL--TLDEYPTSLRQVKSAQ 144

  Fly   118 LGNMVCVEGIVTKVSLIRPKVVRSVHYCPNTRKVMERKYT--------DLTSFEAVPSGAAYPTK 174
            :..:|.:.||:...:.:|.|..:....|      .:.|:|        .|..| |:|...|.|.:
 Worm   145 VSQVVKISGIIVAAAQVRSKATKVTLQC------RQCKHTIPDVSIKPGLEGF-ALPRTCAAPQQ 202

  Fly   175 DEDGNLLETEYGLSVYK----DHQTLTIQEMPEKAPAGQLPRSVDIVCDDDLVDRCKPGDRVQIV 235
            .:........|.:...|    |:|||.:||.||..|.|::||.:.:..:..|.|:..||:||.||
 Worm   203 GQMQRCPIDPYIMLPDKCECVDYQTLKLQENPEDVPHGEMPRHLQLFTERYLTDKVVPGNRVTIV 267

  Fly   236 GSY--RCLPGKRGG-------------------YTSGTFRTVLLANNISLLSKESNLDISREDIM 279
            |.|  :.|..|:||                   .|||..||     |.:..:.|       |:.|
 Worm   268 GVYSIKKLIQKKGGDKSLQGIRTPYLRVLGIHMETSGPGRT-----NFTTFTPE-------EERM 320

  Fly   280 LCKKLAKNNDIFELLSKSLAPSIHGHAYVKQAILCLLLGGVEKILPNGTRLRGDINVLLIGDPSV 344
            . |.||:..|.:||::||:||||:|.|.:|::|.|||.||..|.||:|...||||||||:|||..
 Worm   321 F-KTLAQRKDAYELIAKSIAPSIYGSADIKKSIACLLFGGARKKLPDGITRRGDINVLLLGDPGT 384

  Fly   345 AKSQLLRYVLNTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKM 409
            ||||||::|...:|..:.|:|:|||..||||:|..|.::....:|.|||||||.|||||||||||
 Worm   385 AKSQLLKFVEQVSPIGVYTSGKGSSAAGLTASVIRDPQSRSFIMEGGAMVLADGGVVCIDEFDKM 449

  Fly   410 SDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRF 474
            .:.||.||||.|||..::|:||||..:||:|||||||||.||||:|:.:.. :||....::||||
 Worm   450 REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVYGRWDESRGD-DNIDFMPTILSRF 513

  Fly   475 DLLFVMLDVIDSDVDQMISDHVVRMH-RYRNPKEADGEPLSMGSSYADSLSFVSSSEEKKDTEVY 538
            |:::::.|..|...|..::.||:.:| .....||.|             ::.|..:.......|.
 Worm   514 DMIYIVKDTHDVLKDATLAKHVIEVHVNASAAKERD-------------IAGVPKTATTDSDGVM 565

  Fly   539 EKYDALLHGKSRQRHEKILSVEFMRKYIHIAK--CMKPKLGEQACEAIANEYSRLRSQEAVETDV 601
            ..:|.          :..|::||::|::..|:  | .|:|..||.|.:.|.|.::|: ..|..|.
 Worm   566 TMFDT----------DGFLTIEFLKKFVTYARLNC-GPRLTPQASEKLVNHYVKMRN-PVVNADA 618

  Fly   602 ARTQ--------PITARTLETLIRLSTAHARARMSKSVTIDDAHAAIELVQFAYFKKV 651
            .::.        |||.|.||.::|::               ::.|.:||.|||..|.|
 Worm   619 FKSGKKAHNSAIPITVRQLEAIVRIA---------------ESIAKMELQQFATDKHV 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm3NP_511048.2 MCM_N 18..101 CDD:379644 26/96 (27%)
MCM 106..648 CDD:214631 205/585 (35%)
mcm-5NP_497858.1 MCM_N 38..153 CDD:291233 29/124 (23%)
MCM 134..673 CDD:214631 207/589 (35%)
AAA 375..516 CDD:99707 82/141 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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