DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcm3 and mcm9

DIOPT Version :9

Sequence 1:NP_511048.2 Gene:Mcm3 / 31449 FlyBaseID:FBgn0284442 Length:819 Species:Drosophila melanogaster
Sequence 2:XP_002932153.1 Gene:mcm9 / 100490403 XenbaseID:XB-GENE-949288 Length:1126 Species:Xenopus tropicalis


Alignment Length:920 Identity:247/920 - (26%)
Similarity:395/920 - (42%) Gaps:224/920 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EQFI-KDIQREYVDFLDDEEDQGIYAGHVKDMIAEKSKRLIVNVNDLKRKN----------PQRA 59
            |.|: :..|:|....|.::.:...|:             |:||...|...|          |...
 Frog    16 ESFVLEHHQKEIAQILTEKYEDAHYS-------------LVVNAMTLFEANMEIGEYFNAFPNEV 67

  Fly    60 LGLLSNAADE-QLAFGRALKEYASTVDPGYAKMHEDL---FVGFEGC--FGNRHVTPRSLTSIYL 118
            |.:..||... .::|.::..|..:.|      |.::.   ..|...|  ....|: ||:..   :
 Frog    68 LPIFDNALRRAAMSFLQSCSEKQTLV------MKQNFHARITGLPVCPELTREHI-PRTRD---V 122

  Fly   119 GNMVCVEGIVTKVSLIRPKVVRSVHYCPNTRKVMERKYTDLTSFEAVPSGAAYPT-------KDE 176
            |:.:.|.|.|.:.||::.........|...:.|:..|    ..||      .|.|       .:|
 Frog   123 GHFLSVTGTVIRTSLVKVLEYEQDFMCNKCKHVVTVK----ADFE------QYYTFKPPITCSNE 177

  Fly   177 DG------NLLETEYGLSVYKDHQTLTIQEMPEKAPAGQLPRSVDIVCDDDLVDRCKPGDRVQIV 235
            :|      ..|......:..:|:|.:.|||..::...|.:|||:.:|.:|||||.||.||.|.:.
 Frog   178 EGCNSSKFTCLSDSSTPASCRDYQEIKIQEQVQRLSVGSIPRSMIVVLEDDLVDSCKSGDDVTVY 242

  Fly   236 G-----------SYRCLPGKRGGYTSGTFRTVLLANNISLLSKES-----NLDISREDIMLCKK- 283
            |           ..||           ....||.||.|::.:::.     |.::.:|.....:| 
 Frog   243 GVVMQRWKPLYIDTRC-----------DLEIVLKANYIAVNNEQPCGVVINEEVRKEYEGFWEKY 296

  Fly   284 ----LAKNNDIFELLSKSLAPSIHGHAYVKQAILCLLLGGVEKILPNGTRLRGDINVLLIGDPSV 344
                |...|:|.    .||.|.:.|...||.|:..:|.|||::|...|||:||:.::||:|||..
 Frog   297 RNSPLEGRNEIL----ASLCPQVFGMFVVKLAVAMVLAGGVQRIDSAGTRVRGESHLLLVGDPGT 357

  Fly   345 AKSQLLRYVLNTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKM 409
            .|||.|:|.:...||::.|.|.||:..|||  ||..:::||..|||||:||||.|:.|||||:.:
 Frog   358 GKSQFLKYAVKITPRSVLTAGIGSTSAGLT--VTAVKDSGEWNLEAGALVLADGGLCCIDEFNSI 420

  Fly   410 SDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRF 474
            .:.|||:|||.|||..::::|||:...||.|.::|||.|| .|:||..::...|:.|...|||||
 Frog   421 KEHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNP-KGQYDPEESISVNVALASPLLSRF 484

  Fly   475 DLLFVMLDVIDSDVDQMISDHVVRMHRYRNPKEADGEPLSMGSSYADSLSFVSSSEEKKDTEVYE 539
            ||:.|:||..:.|.|::||..::         |:.|.|                           
 Frog   485 DLVLVLLDTKNEDWDRIISSFIL---------ESKGCP--------------------------- 513

  Fly   540 KYDALLHGKSRQRHEKILSVEFMRKYIHIAKCMKPKLGEQACEAIANEYSRLRSQEAVETDVART 604
                       ::.:|:.|:|.|:.|..:.|.::||:.:.| ..|...|.:|:.|.:.. :.|||
 Frog   514 -----------RKSDKLWSMEKMKTYFCLIKNLQPKMSQDA-NVILVRYYQLQRQSSCR-NAART 565

  Fly   605 QPITARTLETLIRLSTAHARARMSKSVTIDDAHAAIELVQFAY---------------------- 647
               |.|.||:||||:.||||......||.:||...:.:::.:.                      
 Frog   566 ---TIRLLESLIRLAEAHARLMYRDVVTTEDAITVVSIMESSMQGGALLGGVNALHTSFPENPRE 627

  Fly   648 --------------FKKVLDKDRPSKRRRNSGSDAEDDNGEASSQRSPSRRSKRTRTATVGAD-- 696
                          .:|:|||:.....|:.:....|.|:||::|..|.:....:..:.:...:  
 Frog   628 QYRMQCELLLERLGLQKLLDKELQRLDRQQNEDSLESDHGESASNISCNLVGHKVHSDSAMEETC 692

  Fly   697 SDEEDIEPPQ------PDAGDLTRRETRRS----LPA-RSVAMLMASPSSEE---QSVA---TST 744
            |..|....|.      ||..|:|:.:...|    .|| ::.|:...|.||.:   ||:|   .|.
 Frog   693 STNETFSSPDATRKTIPDILDMTKSDDTISKGTITPAEQNRAIRTQSKSSSKHNTQSLAGGHLSE 757

  Fly   745 TEPAIISDARLGEFKNNLQRLFREAREQSLALARITTAINVGSQEPFTAGEIEAAVHRMTEDNQI 809
            ......||..||.|             .||...:::....:|  |..||.:::.||..:..:...
 Frog   758 NHLTRCSDKSLGWF-------------DSLQSVQMSPISKLG--EGCTAEKLQPAVLPVLAEGSC 807

  Fly   810 MVADDIVFLI 819
            ....::|.|:
 Frog   808 HPDKEVVDLV 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm3NP_511048.2 MCM_N 18..101 CDD:379644 16/96 (17%)
MCM 106..648 CDD:214631 182/611 (30%)
mcm9XP_002932153.1 MCM_N 15..104 CDD:379644 19/106 (18%)
MCM_OB 118..244 CDD:379946 37/138 (27%)
MCM9 306..604 CDD:350666 130/356 (37%)
NadA <808..871 CDD:382005 2/10 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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