Sequence 1: | NP_001096883.3 | Gene: | Rnp4F / 31448 | FlyBaseID: | FBgn0014024 | Length: | 941 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_194158.3 | Gene: | EMB140 / 828529 | AraportID: | AT4G24270 | Length: | 817 | Species: | Arabidopsis thaliana |
Alignment Length: | 986 | Identity: | 216/986 - (21%) |
---|---|---|---|
Similarity: | 359/986 - (36%) | Gaps: | 305/986 - (30%) |
- Green bases have known domain annotations that are detailed below.
Fly 84 ELISSDDEPSVEETEGGNAAGRGRARNDSSSSSDDVGVIEGSELESNSEVSSDSDSDS-DNAGGG 147
Fly 148 NQLERSYQELNALPSKKFAQMVSLIGIAFKLNDLEKIESSVLELQNLATVPAHVWLKYLKARLVV 212
Fly 213 TQTDEERKAFEEQCAKALGYYYSIPLSEYVVNYLVDQGNVQNHVLWAKLLA---DYDVE---RPD 271
Fly 272 FG-DKLRSLIST--------ITDENEA-AAFVEMLQKHCVTW-TCNVEQR----QMIKSVVDKFK 321
Fly 322 QHLD----------------ETTRGWD-------------------------WSEQHKAHVYDVE 345
Fly 346 TLSLDD--------DLKNAV-----------IRFIFERSVAKFPIVDVLWLSYIEFIQFEGVTVP 391
Fly 392 ENEDENEVTAEMVAKRAKRLGKGFLRNTELDLANRGVRSHP-SVQLNHRFLDLMERSDFELAEVD 455
Fly 456 EEIRLILQRIVTDMDMTVELHL---DYLAYRIRNTNASDEQQVASLRAAFNHAWEELTVLYGDQA 517
Fly 518 DTRYEVLQLWAQVEYTQLGSPDNG-REIWRQIMGYPGSSIRGLLWLNFAQMESEYNGGH--GTRD 579
Fly 580 VLRKAL--------SQPVLENGLMVQEFFRRYERCYGTYESIAACQALDLPVEYVKPRSRIKPNS 636
Fly 637 QSAYPRQQKLK-PRQQQQQTNREP---LNREQRRRQAHEQQQQQQQQQKHGIKKSRTEPS-GG-- 694
Fly 695 ATSPPSKVKGPANAEAKESNFKYSPNMEINK---------IFVRNLHPACSKEELHELFSPFGTI 750
Fly 751 KDVRLV-HKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVAISNPPPRGTSAVKPSVA 814
Fly 815 PKRRVPTSLIPTTLVRQEVAAKKLRLLLPEPGDISSTSASVDVAIKREANGEEQKGDVQERDEQK 879
Fly 880 GEEQKGEEQKGEEPKGEEQKGDDQIGEEQSGVEQKGDEKKEEEMPAAV---------------PK 929
Fly 930 SNDDFRKLFLK 940 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rnp4F | NP_001096883.3 | RRM | <681..>811 | CDD:223796 | 36/142 (25%) |
RRM_SF | 722..802 | CDD:302621 | 23/89 (26%) | ||
Paf1 | <816..922 | CDD:281915 | 18/105 (17%) | ||
Lsm_interact | 922..940 | CDD:283133 | 10/32 (31%) | ||
EMB140 | NP_194158.3 | RNA14 | 53..567 | CDD:227438 | 123/600 (21%) |
RRM | 561..>755 | CDD:223796 | 49/228 (21%) | ||
RRM | 652..723 | CDD:214636 | 18/71 (25%) | ||
Lsm_interact | 798..816 | CDD:398843 | 8/17 (47%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG0128 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 79 | 1.000 | Inparanoid score | I2386 |
OMA | 1 | 1.010 | - | - | QHG54905 | |
OrthoDB | 1 | 1.010 | - | - | D867827at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0004071 | |
OrthoInspector | 1 | 1.000 | - | - | oto3746 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103012 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X5096 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
10 | 9.740 |