DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnp4F and EMB140

DIOPT Version :9

Sequence 1:NP_001096883.3 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_194158.3 Gene:EMB140 / 828529 AraportID:AT4G24270 Length:817 Species:Arabidopsis thaliana


Alignment Length:986 Identity:216/986 - (21%)
Similarity:359/986 - (36%) Gaps:305/986 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ELISSDDEPSVEETEGGNAAGRGRARNDSSSSSDDVGVIEGSELESNSEVSSDSDSDS-DNAGGG 147
            ||:|:.|: .:|:     |:....||.|..||.|                |.|||||| |.|...
plant     7 ELVSNTDQ-KMED-----ASAENPARADPPSSDD----------------SGDSDSDSEDEAESN 49

  Fly   148 NQLERSYQELNALPSKKFAQMVSLIGIAFKLNDLEKIESSVLELQNLATVPAHVWLKYLKARLVV 212
            .|:.....||:|.| ..:...|..|.:..|..:|||:..:...:..:..:...:||::.:     
plant    50 QQIVTLESELSANP-YNYDAYVQYIKLLRKTANLEKLRQAREAMSAIFPLSPSLWLEWAR----- 108

  Fly   213 TQTDEERKAFEEQCAKALGYYYSIPLSEYVVNYLVDQGNVQNHVLWAKLLA---DYDVE---RPD 271
               ||...|..|...:.: ..|...||:|           |:..||...|:   ::|..   .|.
plant   109 ---DEASLAASENVPEIV-MLYERGLSDY-----------QSVSLWCDYLSFMLEFDPSVRGYPS 158

  Fly   272 FG-DKLRSLIST--------ITDENEA-AAFVEMLQKHCVTW-TCNVEQR----QMIKSVVDKFK 321
            .| .|:|||...        :|:.|.. ..:.|..|....|. ..::|:|    |.|:|:   |.
plant   159 EGISKMRSLFERAIPAAGFHVTEGNRIWEGYREFEQGVLATIDEADIEERNKQIQRIRSI---FH 220

  Fly   322 QHLD----------------ETTRGWD-------------------------WSEQHKAHVYDVE 345
            :||.                |..:|.|                         :||  :||:  .|
plant   221 RHLSVPLENLSSTLIAYKTWELEQGIDLDIGSDDLSKVSHQVAVANKKAQQMYSE--RAHL--EE 281

  Fly   346 TLSLDD--------DLKNAV-----------IRFIFERSVAKFPIVDVLWLSYIEFIQFEGVTVP 391
            .:|..|        :..|.:           ::.|:||:||::|:...||:.|..::.       
plant   282 NISKQDLSDTEKFQEFMNYIKFEKTSGDPTRVQAIYERAVAEYPVSSDLWIDYTVYLD------- 339

  Fly   392 ENEDENEVTAEMVAKRAKRLGKGFLRNTELDLANRGVRSHP-SVQLNHRFLDLMERSDFELAEVD 455
                           :..::||....     ..:|..||.| :..|..|:|..:||......|:.
plant   340 ---------------KTLKVGKAITH-----AYSRATRSCPWTGDLWARYLLALERGSASEKEIY 384

  Fly   456 EEIRLILQRIVTDMDMTVELHL---DYLAYRIRNTNASDEQQVASLRAAFNHAWEELTVLYGDQA 517
            :.....||...:..:..::|:|   |.|..|:.:|...:....:.:|..|..|.:.||. :....
plant   385 DVFEKSLQCTFSSFEEYLDLYLTRVDGLRRRMLSTRMLEALDYSLIRETFQQASDYLTP-HMQNT 448

  Fly   518 DTRYEVLQLWAQVEYTQLGSPDNG-REIWRQIMGYPGSSIRGLLWLNFAQMESEYNGGH--GTRD 579
            |:...:...||.:| ..:|....| |.:|...:...|    |:|....|.::.|.:.||  ..|.
plant   449 DSLLHLHTYWANLE-LNIGKDLAGARGVWDSFLKKSG----GMLAAWHAYIDMEVHLGHIKEARS 508

  Fly   580 VLRKAL--------SQPVLENGLMVQEFFRRYERCYGTYESIAACQALDLPVEYVKPRSRIKPNS 636
            :.|:..        |:.:.:..|       |:||.:|..|.      .||.|             
plant   509 IYRRCYTRKFDGTGSEDICKGWL-------RFEREHGDLEH------FDLAV------------- 547

  Fly   637 QSAYPRQQKLK-PRQQQQQTNREP---LNREQRRRQAHEQQQQQQQQQKHGIKKSRTEPS-GG-- 694
            |...||.::|: .|.||:.|..:|   |.....:::..||..:::...|...:||:.|.. ||  
plant   548 QKVMPRLEELQLMRLQQESTPVKPSAGLKEHSSQKRKAEQNVEEESLAKRQKRKSQKEVDLGGQS 612

  Fly   695 ATSPPSKVKGPANAEAKESNFKYSPNMEINK---------IFVRNLHPACSKEELHELFSPFGTI 750
            ||.|.:|.....|.:..:|:.:.:.:.:..|         .|:.||.....:|::.:.|...|.:
plant   613 ATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGV 677

  Fly   751 KDVRLV-HKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVAISNPPPRGTSAVKPSVA 814
            ..:|:: ||...:.:|:||.:|........|:| ::..:|.|..||:|.|||             
plant   678 DSIRILHHKDTGKPRGLAYADFVDDEHLAAAIA-KNRKMFFGKKISIARSNP------------- 728

  Fly   815 PKRRVPTSLIPTTLVRQEVAAKKLRLLLPEPGDISSTSASVDVAIKREANGEEQKGDVQERDEQK 879
                                 ||.:......|::..:..|.|.::..|                |
plant   729 ---------------------KKGKKEFTRRGNVDGSGNSKDPSLISE----------------K 756

  Fly   880 GEEQKGEEQKGEEPKGEEQKGDDQIGEEQSGVEQKGDEKKEEEMPAAV---------------PK 929
            .:...|.|.:||. ||.|             ||.:|  |....:|..|               ||
plant   757 AKAPLGGETEGER-KGNE-------------VEVRG--KNTFAVPRNVKPLGYTTPKPSADETPK 805

  Fly   930 SNDDFRKLFLK 940
            |||:||.:|||
plant   806 SNDEFRNMFLK 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnp4FNP_001096883.3 RRM <681..>811 CDD:223796 36/142 (25%)
RRM_SF 722..802 CDD:302621 23/89 (26%)
Paf1 <816..922 CDD:281915 18/105 (17%)
Lsm_interact 922..940 CDD:283133 10/32 (31%)
EMB140NP_194158.3 RNA14 53..567 CDD:227438 123/600 (21%)
RRM 561..>755 CDD:223796 49/228 (21%)
RRM 652..723 CDD:214636 18/71 (25%)
Lsm_interact 798..816 CDD:398843 8/17 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0128
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 79 1.000 Inparanoid score I2386
OMA 1 1.010 - - QHG54905
OrthoDB 1 1.010 - - D867827at2759
OrthoFinder 1 1.000 - - FOG0004071
OrthoInspector 1 1.000 - - oto3746
orthoMCL 1 0.900 - - OOG6_103012
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5096
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.740

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