DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnp4F and Sart3

DIOPT Version :10

Sequence 1:NP_511047.2 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001343550.1 Gene:Sart3 / 53890 MGIID:1858230 Length:980 Species:Mus musculus


Alignment Length:1015 Identity:210/1015 - (20%)
Similarity:373/1015 - (36%) Gaps:302/1015 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 SSDDEPSVEETEGGNAAGR-------GRARND-SSSSSDDVGVIEGSELESNSEVSSDSDSDSDN 143
            ||..||.||...|..|.|.       |..|.. |.:.:.:....:|...:...|.:|.||.|.::
Mouse     7 SSASEPEVEPQAGPEAEGEEDEAKPAGVQRKVLSGAVAAEAAEAKGPGWDLQREGASGSDGDEED 71

  Fly   144 A------GGGNQLERSY---QELNALPSKKFAQMVSLIGIAFKLN-----------DLEKIESSV 188
            |      ....:.|..|   :|.|.|..::..:.:|:.|..:..:           :|.::.::.
Mouse    72 AMASSAESSAGEDEWEYDEEEEKNQLEIERLEEQLSINGYDYNCHVELIRLLRLEGELSRVRAAR 136

  Fly   189 LELQNLATVPAHVWLKYLKARLVVTQTDEERKAFEEQCAKALGYYYS----IPLSEYVVNYLVDQ 249
            .::..|..:...:||::|...:.:.....:|:...|...:|:..|..    :...:|.|..:..:
Mouse   137 QKMSELFPLTEELWLEWLHDEISMAMDGLDREHVYELFERAVKDYICPNIWLEYGQYSVGGIGQK 201

  Fly   250 GNVQN--------------HVLWAKLLADYDVERPDFGDKL----RSLISTITDENEAAAFVEML 296
            |.::.              |:  .|.||.::..| :|...:    |.:.:.::..:....|...|
Mouse   202 GGLEKVRSVFERALSSVGLHM--TKGLAIWEAYR-EFESAIVEAARPIAAFLSPSDREQTFDSQL 263

  Fly   297 QK-HCV--------------------TWTCNVEQRQMIKSVVDKFKQHLDETTRGWDWSE----- 335
            :| |.:                    .|:    :..|.:||:..:::.|.:..:...:.|     
Mouse   264 EKVHSLFRRQLAIPLYEMEATFAEYEEWS----EEPMPESVLQSYQKALGQLEKYKPYEEALLQA 324

  Fly   336 ------QHKAHVYDVETLSLDDDLKNAVIRFIFERSVAKFPIVDVLWLSYIEFIQFEGVTVPENE 394
                  :::|:: |.| :.:.|.   |.|:.||||::.:..:|..||:.|.:::.          
Mouse   325 EAPRLAEYQAYI-DFE-MKIGDP---ARIQLIFERALVENCLVPDLWIRYSQYLD---------- 374

  Fly   395 DENEVTAEMVAKRAKRLGKGFLRNTELDLANRGVRSHP-SVQLNHRFLDLMERSDFELAEVDEEI 458
                       ::.|      :::..|.:.:|.||:.| :|.|..|:|..|||...:...:....
Mouse   375 -----------RQLK------VKDLVLSVHSRAVRNCPWTVALWSRYLLAMERHGLDHQTISATF 422

  Fly   459 RLILQR---IVTDMDMTVELHLDYLAYRIRNTNASDEQQVASLRAAFNHAWE----ELTVLYGDQ 516
            ...|..   ..||.....:::||||..|: :......:::..||:.|..|.|    |:...:.:.
Mouse   423 ENALSAGFIQATDYVEIWQVYLDYLRRRV-DFRQDSSKELEELRSMFTRALEYLQQEVEERFSES 486

  Fly   517 ADTRYEVLQLWAQVEYTQLGSPDNGREIWRQIMGYPGSSIRGLLWLNFAQMESEYNGGHGTRDVL 581
            .|....::|.||:||.....:....||:|..|| ..|::....:||.:..:|.    .||.....
Mouse   487 GDPSCLIMQSWARVEARLCNNMQKARELWDSIM-TRGNAKYANMWLEYYNLER----AHGDTQHC 546

  Fly   582 RKALSQPVL------ENGLMVQEFFRRYERCYGTYESIAACQALDLPVEYVKPR-SRIKPNSQSA 639
            ||||.:.|.      |:   |.|.....||..||.|.      .||.::..:.| :|:......|
Mouse   547 RKALHRAVQCTSDYPEH---VCEVLLTMERTEGTLED------WDLAIQKTETRLARVNEQRMKA 602

  Fly   640 YPRQQKLKPRQQQQQTNREPLNRE--------------QRRRQAHEQQQQQQQQQKHGIKKSRTE 690
            ..::..|..:::::...|:.:..|              :||....|:.:..:::::...|:.|||
Mouse   603 AEKEAALVQQEEEKAEQRKKVRAEKKALKKKKKTRGADKRREDEDEENEWGEEEEEQPSKRRRTE 667

  Fly   691 ---PSGGATS-----------------PPSKVK-------------------------------- 703
               .||.|::                 ||||.|                                
Mouse   668 NSLASGEASAMKEETELSGKCLTIDVGPPSKQKEKAASLKRDMPKVAHDSSKDSVTVFVSNLPYS 732

  Fly   704 ---------------------------------------------------------------GP 705
                                                                           .|
Mouse   733 IEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSP 797

  Fly   706 ANAEAKESNFK---YSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIA 767
            ...::|..:||   ||..:|.:|:|:..|..:|:||||.::....||:||:|||.....:.||:|
Mouse   798 CVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLA 862

  Fly   768 YVEFEKPGEAQRAVAGRDGCLFKGMNISVAISNPPPRGTSAVKPSV-----AP-----------K 816
            |||:|...:|.:||...||...:...|.|||||||.|.... ||.|     ||           |
Mouse   863 YVEYENESQASQAVMKMDGMTIRENVIKVAISNPPQRKVPE-KPEVRTAPGAPMLPRQMYGARGK 926

  Fly   817 RRVPTSLIPTTLVRQEVAAKKLRLLLPEPGDISSTSASVD 856
            .|...||:|..|.||..|.:...  .|.||...:.|.:.:
Mouse   927 GRTQLSLLPRALQRQGAAPQAEN--GPAPGPAVAPSVATE 964

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnp4FNP_511047.2 RRM_SF 722..802 CDD:473069 34/79 (43%)
2A1904 <860..>925 CDD:273344
Lsm_interact 922..940 CDD:398843
Sart3NP_001343550.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..92 21/84 (25%)
RNA14 101..>479 CDD:227438 71/417 (17%)
HAT 5. /evidence=ECO:0000255 343..375 11/55 (20%)
HAT 6. /evidence=ECO:0000255 378..410 11/37 (30%)
HAT 7. /evidence=ECO:0000255 413..449 7/35 (20%)
HAT 8. /evidence=ECO:0000255 459..492 7/32 (22%)
Required for interaction with USP4. /evidence=ECO:0000250|UniProtKB:Q15020 506..539 9/37 (24%)
Necessary and sufficient for U6 snRNA binding. /evidence=ECO:0000250|UniProtKB:Q15020 556..970 92/421 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 609..714 18/104 (17%)
Required for nuclear localization. /evidence=ECO:0000250|UniProtKB:Q15020 619..688 12/68 (18%)
Nuclear localization signal. /evidence=ECO:0000255|PROSITE-ProRule:PRU00768 620..627 1/6 (17%)
RRM1_SART3 723..796 CDD:409825 0/72 (0%)
RRM2_SART3 817..897 CDD:409826 34/79 (43%)
LSM_int_assoc 895..955 CDD:465192 20/62 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 898..980 19/70 (27%)
Blue background indicates that the domain is not in the aligned region.

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