DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rnp4F and Rnps1

DIOPT Version :9

Sequence 1:NP_001096883.3 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_001011890.1 Gene:Rnps1 / 287113 RGDID:1307522 Length:305 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnp4FNP_001096883.3 RRM <681..>811 CDD:223796
RRM_SF 722..802 CDD:302621
Paf1 <816..922 CDD:281915
Lsm_interact 922..940 CDD:283133
Rnps1NP_001011890.1 Necessary for interaction with the cleaved p110 isoform of CDC2L1. /evidence=ECO:0000250 1..220
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..170
Necessary for interaction with SRP54, nuclear localization and exon-skipping. /evidence=ECO:0000250 1..161
Necessary for interactions with UPF2 and UPF3B and UPF2-dependent NMD. /evidence=ECO:0000250 69..121
Necessary for interaction with PNN and exon-skipping. /evidence=ECO:0000250 156..242
Interaction with SAP18 and ACIN1. /evidence=ECO:0000250 159..244
RRM_RNPS1 163..236 CDD:409800
Necessary for interaction with TRA2B, nuclear localization and exon-skipping. /evidence=ECO:0000250 238..305
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..305
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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