DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Rnp4F and rnp24

DIOPT Version :9

Sequence 1:	NP_001096883.3	Gene:	Rnp4F / 31448	FlyBaseID:	FBgn0014024	Length:	941	Species:	Drosophila melanogaster
Sequence 2:	NP_594970.1	Gene:	rnp24 / 2542965	PomBaseID:	SPAC3G6.04	Length:	369	Species:	Schizosaccharomyces pombe

Alignment Length:	234	Identity:	56/234 - (23%)
Similarity:	98/234 - (41%)	Gaps:	41/234 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   643 QQKLKPRQQQQQTN-REPLNREQR------------RRQAHEQQQQQQQQQKHG---IKKSRTEP 691
            ::.:||...:|.|. ..|:::|:|            ...|.:...|..::..:|   :.||.|:.
pombe   138 EENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDF 202

  Fly   692 SGGATSPPSKVKGPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLV 756
            ||    .|||   |||..:|.::.:.|.....:.:||.||....:..:|.|.|...|.|:.|||:
pombe   203 SG----RPSK---PANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260

  Fly   757 -HKLNKQFKGIAYVEFEKPGEAQRAV-AGRDGC-LFKGMNISVAISNPPPRGTSA---------- 808
             .:...:.||..:|:|.......:|: .|.:.. |..|.:.|..:.|..|...|.
pombe   261 TFEDTGKCKGFGFVDFPDIDTCMKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGRFNDAESLGQ 325

  Fly   809 -VKPSVAPKRRV-PTSLIPTTLVRQEVAAKKLRLLLPEP 845
             .||:....|:: |.|:.|...:.:   |::....:.||
pombe   326 EDKPNFKRARKIDPRSVRPGAALAK---AQRSSAAIVEP 361

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rnp4F	NP_001096883.3	RRM	<681..>811	CDD:223796	38/146 (26%)
		RRM_SF	722..802	CDD:302621	22/82 (27%)
		Paf1	<816..922	CDD:281915	7/31 (23%)
		Lsm_interact	922..940	CDD:283133
rnp24	NP_594970.1	RRM	9..308	CDD:223796	44/176 (25%)
		RRM1_Nop13p_fungi	107..199	CDD:240842	11/60 (18%)
		RRM2_Nop13p_fungi	230..299	CDD:240843	19/68 (28%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3656
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.030