DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnp4F and Y54B9A.1

DIOPT Version :10

Sequence 1:NP_511047.2 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_505440.1 Gene:Y54B9A.1 / 190253 WormBaseID:WBGene00021821 Length:129 Species:Caenorhabditis elegans


Alignment Length:87 Identity:22/87 - (25%)
Similarity:41/87 - (47%) Gaps:7/87 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   835 AKKLRLLLPEPGDISSTSASVDVAIKREANGEEQKGDVQERDEQKGEEQKGEEQKGEEPKGEEQK 899
            :||..::|...|....       .:.|:..||..:|:.:..:.::||..:||..:||..:||..:
 Worm     9 SKKFWIVLEPYGKFKK-------MLLRDLRGETHRGETRRGETRRGETHRGETHRGETHRGETHR 66

  Fly   900 GDDQIGEEQSGVEQKGDEKKEE 921
            |:...||...|...:|:..:.|
 Worm    67 GETHRGETHRGETYRGETHRGE 88

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnp4FNP_511047.2 RRM_SF 722..802 CDD:473069
2A1904 <860..>925 CDD:273344 18/62 (29%)
Lsm_interact 922..940 CDD:398843 22/87 (25%)
Y54B9A.1NP_505440.1 GETHR 32..56 CDD:398995 7/23 (30%)
GETHR 47..71 CDD:398995 9/23 (39%)
GETHR 77..101 CDD:398995 3/12 (25%)
Blue background indicates that the domain is not in the aligned region.

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