DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnp4F and C53C11.4

DIOPT Version :10

Sequence 1:NP_511047.2 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_510809.1 Gene:C53C11.4 / 183756 WormBaseID:WBGene00016901 Length:101 Species:Caenorhabditis elegans


Alignment Length:82 Identity:22/82 - (26%)
Similarity:37/82 - (45%) Gaps:18/82 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   832 EVAAKKLRLLLPEPGDISSTSASVDVAIKREANGEEQKGDVQERDEQKGEEQKGEEQKGEEPKGE 896
            |.:.|.|::||                  |:..||..:|:....:..:||..:||..:||..:||
 Worm    17 EPSGKFLKMLL------------------RDLRGETHRGETHHGETHRGEAHRGETHRGETHRGE 63

  Fly   897 EQKGDDQIGEEQSGVEQ 913
            .::|:...||.:.|..|
 Worm    64 TRRGETHRGETRRGETQ 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnp4FNP_511047.2 RRM_SF 722..802 CDD:473069
2A1904 <860..>925 CDD:273344 17/54 (31%)
Lsm_interact 922..940 CDD:398843
C53C11.4NP_510809.1 GETHR 32..56 CDD:398995 7/23 (30%)
GETHR 52..76 CDD:398995 9/23 (39%)
Blue background indicates that the domain is not in the aligned region.

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