DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TrxT and txn

DIOPT Version :9

Sequence 1:NP_001284881.1 Gene:TrxT / 31443 FlyBaseID:FBgn0029752 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001011127.1 Gene:txn / 496541 XenbaseID:XB-GENE-5895392 Length:105 Species:Xenopus tropicalis


Alignment Length:87 Identity:38/87 - (43%)
Similarity:59/87 - (67%) Gaps:1/87 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 AEDKLVVIDFYADWCGPCKIIAPKLDELAQQYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIK 82
            |.:|||||||.|.|||||:.|||..::|:.::.| :|:.||:||:..|:.....::|||||:|.|
 Frog    18 AGEKLVVIDFTAKWCGPCQRIAPDFEKLSTEFPD-IVLYKVDVDDASDVAQVCGISSMPTFIFFK 81

  Fly    83 GGNVLELFVGCNSDKLAKLMEK 104
            .|..:|.|.|.:..||.:.:::
 Frog    82 SGKQVERFSGADIKKLKETIKR 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrxTNP_001284881.1 Thioredoxin 13..105 CDD:278513 38/87 (44%)
txnNP_001011127.1 TRX_family 9..102 CDD:239245 38/84 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 101 1.000 Inparanoid score I4850
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1482186at2759
OrthoFinder 1 1.000 - - FOG0000170
OrthoInspector 1 1.000 - - mtm9465
Panther 1 1.100 - - O PTHR10438
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X356
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

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