Protein Alignment snf and snrpa

DIOPT Version :9

• Sequence 1: NP_511045.1
• Gene: snf / 31442
• FlyBaseID: FBgn0003449
• Length: 216
• Species: Drosophila melanogaster
• Sequence 2: NP_001016784.1
• Gene: snrpa / 549538
• XenbaseID: XB-GENE-494246
• Length: 282
• Species: Xenopus tropicalis
• Alignment Length: 278
• Identity: 153/278 - (55%)
• Similarity: 180/278 - (64%)
• Gaps: 63/278 - (22%)

  Fly     2 EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNAL 66
            |:.||.|||||||||||||:|||||||||||||||||||:..::||||||||||||||.||:|||
 Frog     5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNAL 69

  Fly    67 RTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSA---- 127
            |:|||||||||||:|.||||||||:||:|||:.||.:|.:..:...|.:....||..|.:|
 Frog    70 RSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVERDRKRQEKRKVKGQEAPGVKKALPGAALLPG 134

  Fly   128 -----------------------------------------------ENSNPNAQ---------- 135
                                                           ....|:..
 Frog   135 VPGQMAGMQNIPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQIPPGGMPHGHLMPGQMAPMQ 199

  Fly   136 --TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEAL 198
              :|.|||.|||||||||||||:|||||||||||||||||||.|||||||||..|:|:.||:|:|
 Frog   200 PISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESL 264

  Fly   199 QGFKITPTHAMKITFAKK 216
            ||||||.:::|||:||||
 Frog   265 QGFKITQSNSMKISFAKK 282

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snf	NP_511045.1	RRM	<5..177	CDD:223796	124/234 (53%)
		RRM_SF	6..96	CDD:302621	75/89 (84%)
		RRM2_SNF	137..216	CDD:240923	62/78 (79%)
snrpa	NP_001016784.1	RRM1_U1A	7..95	CDD:240921	74/87 (85%)
		PABP-1234	<10..205	CDD:130689	87/194 (45%)
		RRM2_U1A	203..282	CDD:240924	62/78 (79%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	128	1.000	Domainoid score	I5282
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H3380
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG54412
OrthoDB	1	1.010	-	-		D1608132at2759
OrthoFinder	1	1.000	-	-		FOG0001375
OrthoInspector	1	1.000	-	-		otm49059
Panther	1	1.100	-	-	LDO	PTHR10501
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X1105
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	10	10.030