Protein Alignment snf and snrpb2

DIOPT Version :10

• Sequence 1: NP_511045.1
• Gene: snf / 31442
• FlyBaseID: FBgn0003449
• Length: 216
• Species: Drosophila melanogaster
• Sequence 2: NP_001243119.1
• Gene: snrpb2 / 402896
• ZFINID: ZDB-GENE-060616-2
• Length: 220
• Species: Danio rerio
• Alignment Length: 221
• Identity: 143/221 - (64%)
• Similarity: 179/221 - (80%)
• Gaps: 6/221 - (2%)

  Fly     1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNA 65
            |::.||.||||||:|:||||||||:||||:|||||||:|||||||::|||||||||||:.:|:||
Zfish     1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNA 65

  Fly    66 LRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSAENS 130
            ||.:||||||:|||:|.|:|:|||:|:|::||:.::.||.:..|.|. .....:..|||:.|.|:
Zfish    66 LRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQ-EQAAANANKKPAGAVNT 129

  Fly   131 NPNAQT-----EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQ 190
            .|....     :.|||.||||.||||||||||||||||||||||||||||.:|||:||||.:|.|
Zfish   130 QPPPPATVQIPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQ 194

  Fly   191 SNAAKEALQGFKITPTHAMKITFAKK 216
            :..||:|||||:||.|.|||||:|||
Zfish   195 AGVAKDALQGFRITATCAMKITYAKK 220

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snf	NP_511045.1	RRM1_SNF	1..85	CDD:409905	63/83 (76%)
		RRM2_SNF	137..216	CDD:240923	60/78 (77%)
snrpb2	NP_001243119.1	RRM1_U2B	6..96	CDD:409907	67/89 (75%)
		RRM_SF	141..220	CDD:473069	60/78 (77%)