Protein Alignment snf and snrpb2

DIOPT Version :9

• Sequence 1: NP_511045.1
• Gene: snf / 31442
• FlyBaseID: FBgn0003449
• Length: 216
• Species: Drosophila melanogaster
• Sequence 2: NP_001243119.1
• Gene: snrpb2 / 402896
• ZFINID: ZDB-GENE-060616-2
• Length: 220
• Species: Danio rerio
• Alignment Length: 221
• Identity: 143/221 - (64%)
• Similarity: 179/221 - (80%)
• Gaps: 6/221 - (2%)

  Fly     1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNA 65
            |::.||.||||||:|:||||||||:||||:|||||||:|||||||::|||||||||||:.:|:||
Zfish     1 MDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATNA 65

  Fly    66 LRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSAENS 130
            ||.:||||||:|||:|.|:|:|||:|:|::||:.::.||.:..|.|. .....:..|||:.|.|:
Zfish    66 LRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQ-EQAAANANKKPAGAVNT 129

  Fly   131 NPNAQT-----EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQ 190
            .|....     :.|||.||||.||||||||||||||||||||||||||||.:|||:||||.:|.|
Zfish   130 QPPPPATVQIPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQ 194

  Fly   191 SNAAKEALQGFKITPTHAMKITFAKK 216
            :..||:|||||:||.|.|||||:|||
Zfish   195 AGVAKDALQGFRITATCAMKITYAKK 220

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snf	NP_511045.1	RRM	<5..177	CDD:223796	115/176 (65%)
		RRM_SF	6..96	CDD:302621	67/89 (75%)
		RRM2_SNF	137..216	CDD:240923	60/78 (77%)
snrpb2	NP_001243119.1	RRM	<1..>85	CDD:223796	63/83 (76%)
		RRM1_U2B	6..96	CDD:240922	67/89 (75%)
		RRM_SF	141..220	CDD:302621	60/78 (77%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170580939
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	286	1.000	Inparanoid score	I2823
OMA	1	1.010	-	-		QHG54412
OrthoDB	1	1.010	-	-		D1608132at2759
OrthoFinder	1	1.000	-	-		FOG0001375
OrthoInspector	1	1.000	-	-		oto38702
orthoMCL	1	0.900	-	-		OOG6_100753
Panther	1	1.100	-	-	O	PTHR10501
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X1105
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	10	9.910