DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment snf and sm

DIOPT Version :9

Sequence 1:	NP_511045.1	Gene:	snf / 31442	FlyBaseID:	FBgn0003449	Length:	216	Species:	Drosophila melanogaster
Sequence 2:	NP_001246428.1	Gene:	sm / 37254	FlyBaseID:	FBgn0003435	Length:	552	Species:	Drosophila melanogaster

Alignment Length:	178	Identity:	43/178 - (24%)
Similarity:	69/178 - (38%)	Gaps:	33/178 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    27 LYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNALRTMQGFPF-YDKPMQIAYSKSD--S 88
            |:.:...:|.:..|..|||  ..|.|.|...:..:....::.:...|. ....:|||:||.:  |
  Fly   335 LFNLVCLYGNVARIKFLKT--KEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLS 397

  Fly    89 DIVAKI-----KGTFKERPKKVKPPKPAPGTDEKKDKKKKPSSAENSNPNAQTEQPPNQILFLTN 148
            :::...     ..:|||.            |..|.::...|:.|..:.     .|||::||...|
  Fly   398 EVINPFLLPDHSPSFKEY------------TGSKNNRFLSPAQASKNR-----IQPPSKILHFFN 445

  Fly   149 LPEETNEMMLSMLFN--QFPGFKEVRLVP---NRHDIAFVEFTTELQS 191
            .|....|..|..:||  ..|. ..|||.|   .|.....:||:...|:
  Fly   446 TPPGLTEDQLIGIFNIKDVPA-TSVRLFPLKTERSSSGLIEFSNISQA 492

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
snf	NP_511045.1	RRM	<5..177	CDD:223796	39/162 (24%)
		RRM_SF	6..96	CDD:302621	16/76 (21%)
		RRM2_SNF	137..216	CDD:240923	20/60 (33%)
sm	NP_001246428.1	RRM2_hnRNPL_like	80..165	CDD:241138
		RRM3_hnRNPL_like	319..390	CDD:240870	12/56 (21%)
		RRM4_hnRNPL_like	437..519	CDD:240873	18/57 (32%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR10501
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.100