DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment snf and Snrpb2

DIOPT Version :9

Sequence 1:	NP_511045.1	Gene:	snf / 31442	FlyBaseID:	FBgn0003449	Length:	216	Species:	Drosophila melanogaster
Sequence 2:	XP_038961397.1	Gene:	Snrpb2 / 362223	RGDID:	1310194	Length:	243	Species:	Rattus norvegicus

Alignment Length:	225	Identity:	151/225 - (67%)
Similarity:	183/225 - (81%)	Gaps:	9/225 - (4%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNA 65
            |::.||.||||||:|:||||||||:||||:|||||.::|||||||:||||||||||||:||::||
  Rat    19 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 83

  Fly    66 LRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF-----KERPKKVKPPKPAPGTDEKKDKKKKPS 125
            ||.:||||||.|||:|.|:|:||||::|::|||     |:..||.|..:.|.....||..:..|:
  Rat    84 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKPGQGTPN 148

  Fly   126 SAE---NSNPNAQT-EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFT 186
            ||.   |:.||.|. :.|||.||||.||||||||||||||||||||||||||||.|||||||||.
  Rat   149 SANTQGNAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 213

  Fly   187 TELQSNAAKEALQGFKITPTHAMKITFAKK 216
            .:.|:.||::|||||||||:||||||:|||
  Rat   214 NDGQAGAARDALQGFKITPSHAMKITYAKK 243

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
snf	NP_511045.1	RRM	<5..177	CDD:223796	120/180 (67%)
		RRM_SF	6..96	CDD:302621	67/89 (75%)
		RRM2_SNF	137..216	CDD:240923	63/78 (81%)
Snrpb2	XP_038961397.1	RRM1_U2B	24..114	CDD:409907	67/89 (75%)
Snrpb2	XP_038961397.1	RRM2_U2B	164..243	CDD:240925	63/78 (81%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166341042
Domainoid	1	1.000	108	1.000	Domainoid score	I6311
eggNOG	1	0.900	-	-		E1_KOG4206
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	297	1.000	Inparanoid score	I2635
OMA	1	1.010	-	-		QHG54412
OrthoDB	1	1.010	-	-		D1608132at2759
OrthoFinder	1	1.000	-	-		FOG0001375
OrthoInspector	1	1.000	-	-		otm45975
orthoMCL	1	0.900	-	-		OOG6_100753
Panther	1	1.100	-	-	O	PTHR10501
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1105
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	14	13.770